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glycoprotein
Euk-VirMorogoro_maize-associated_virus
glycoprotein__YP_010087200__Morogoro_maize-associated_virus__2497337
Identity
- Accession:
- YP_010087200 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
71.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Alphanucleorhabdovirus›
Morogoro_maize-associated_virus
TaxID: 2497337
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 87-217
Domain cluster:
rep: glycoprotein__YP_010086816__Wheat_yellow_striate_virus__2152660__D148-272
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 23.0 | 2.90e-01 | 100.0% | 65.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.64 | 54.0 | 5.42e-01 | 100.0% | 91.7% |
| 4648475 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 25.0 | 3.68e-01 | 98.5% | 90.0% |
| 185186 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.56 | 50.0 | 4.70e-01 | 98.5% | 97.5% |
| 2124201 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.56 | 49.0 | 4.68e-01 | 98.5% | 97.5% |
| 2530507 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.55 | 47.0 | 3.99e-01 | 95.4% | 87.0% |
| 3903752 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 25.0 | 2.85e-01 | 91.6% | 56.2% |
| 3220637 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.52 | 38.0 | 4.00e-01 | 74.8% | 100.0% |
| 3510040 | 3115.3.1.2 ↗ | a+b two layers › GP2-like › P56 › P56 › DUF2922 | 0.50 | 23.0 | 2.85e-01 | 100.0% | 68.8% |
D2
medium
residues 46-82_238-365
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zoyD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.80 | 35.0 | 4.49e-01 | 87.9% | 68.6% |
| 4kp3C00 | 1.20.58.1770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 30.0 | 4.23e-01 | 75.8% | 80.2% |
| 2az0B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.69 | 31.0 | 4.74e-01 | 91.5% | 100.0% |
D3
medium
residues 366-462_478-502
Domain cluster:
rep: G__YP_224082__Taro_vein_chlorosis_virus__2908018__D369-461_473-500