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glycoprotein

Euk-Vir

Muir_Springs_virus

glycoprotein__YP_010087312__Muir_Springs_virus__932700

Identity

Accession:
YP_010087312 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

70.4 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Barhavirus› Muir_Springs_virus

TaxID: 932700

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 81-91_220-297
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.84 74.0 7.27e-01 94.4% 96.8%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.77 67.0 6.63e-01 94.4% 96.8%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 53.0 5.28e-01 86.5% 95.7%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.65 51.0 4.43e-01 86.5% 77.3%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 51.0 4.49e-01 85.4% 83.2%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 4.76e-01 86.5% 94.0%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.41e-01 85.4% 99.1%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.63e-01 86.5% 96.1%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 4.15e-01 86.5% 88.6%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 4.54e-01 91.0% 97.3%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 4.08e-01 86.5% 70.1%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 27.0 3.38e-01 80.9% 97.4%
1lmlA04 2.30.34.10 Mainly Beta › Roll › Leishmanolysin; domain 4 › Leishmanolysin domain 4 0.55 42.0 4.06e-01 82.0% 73.7%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 38.0 3.73e-01 76.4% 100.0%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.48e-01 79.8% 87.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 32.0 3.67e-01 86.5% 85.9%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 32.0 3.80e-01 77.5% 91.7%
7ffnN01 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.52 40.0 3.23e-01 83.1% 79.0%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 45.0 3.86e-01 97.8% 94.5%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 41.0 3.44e-01 86.5% 67.1%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 33.0 3.07e-01 76.4% 47.6%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.51 33.0 3.62e-01 100.0% 84.5%
1b12A02 2.170.230.10 Mainly Beta › Beta Complex › Signal Peptidase I; Chain: A, domain 2 › 0.51 35.0 3.72e-01 95.5% 86.5%
2vseA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 43.0 3.77e-01 97.8% 92.2%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 35.0 3.36e-01 100.0% 61.1%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3563672 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 55.0 4.80e-01 86.5% 80.7%
3508680 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 53.0 5.08e-01 85.4% 82.9%
3740122 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.66 53.0 4.64e-01 86.5% 79.7%
3992625 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 52.0 4.99e-01 86.5% 85.7%
3571958 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.66 52.0 4.84e-01 86.5% 81.7%
4582465 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 52.0 4.87e-01 86.5% 93.6%
3626094 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.65 52.0 4.34e-01 86.5% 81.9%
3554105 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 51.0 4.51e-01 86.5% 83.7%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.64 50.0 4.48e-01 86.5% 71.5%
3409083 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.63 50.0 4.40e-01 86.5% 87.4%
3970639 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 4.80e-01 88.8% 90.9%
3861121 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 50.0 4.62e-01 86.5% 82.6%
4024501 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 50.0 4.80e-01 88.8% 95.2%
3844858 220.1.1.39 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZFYVE21_C 0.63 49.0 4.16e-01 86.5% 70.1%
3388895 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.62 49.0 4.63e-01 86.5% 76.4%
3593811 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 4.18e-01 79.8% 94.4%
4012900 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 50.0 4.26e-01 91.0% 91.0%
3911252 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 4.80e-01 85.4% 90.5%
3479384 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 3.75e-01 87.6% 58.6%
3259583 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.60 44.0 4.66e-01 78.7% 87.5%
4045712 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.60 44.0 3.25e-01 78.7% 45.0%
4940641 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 31.0 4.13e-01 82.0% 97.8%
3842576 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.59 49.0 4.53e-01 95.5% 95.0%
3243787 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 4.26e-01 79.8% 91.1%
3213025 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 41.0 3.31e-01 80.9% 87.4%
3269122 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 25.0 2.97e-01 79.8% 63.6%
3188574 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.54 31.0 3.54e-01 77.5% 78.5%
167520 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.50 35.0 3.19e-01 100.0% 51.6%
D2 high residues 96-219
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 93.4 1.70e-26 80.7% 100.0%
D3 medium residues 321-442
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 64.7 1.20e-17 76.2% 69.4%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 38.0 4.01e-01 87.7% 93.3%