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glycoprotein

Euk-Vir

Emaravirus_kiwii

glycoprotein__YP_010088072__Emaravirus_kiwii__2660760

Identity

Accession:
YP_010088072 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

74.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Fimoviridae› Emaravirus› Emaravirus_kiwii

TaxID: 2660760

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-90
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 39.0 3.59e-01 100.0% 42.9%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 50.0 4.42e-01 100.0% 58.1%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.63 51.0 4.10e-01 100.0% 84.8%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 51.0 4.35e-01 100.0% 92.4%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 50.0 4.25e-01 100.0% 90.6%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.23e-01 100.0% 89.1%
6hbzA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.62 51.0 4.19e-01 100.0% 68.9%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.57e-01 98.0% 96.0%
1r21A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.61 50.0 4.13e-01 100.0% 48.0%
7a4aA01 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 50.0 4.35e-01 100.0% 92.8%
1pbyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.45e-01 100.0% 89.5%
6vg1A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.59 49.0 4.15e-01 100.0% 93.5%
3hufA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 47.0 3.76e-01 100.0% 75.0%
4jonC00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 45.0 3.64e-01 100.0% 62.7%
2c9aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.72e-01 100.0% 86.6%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 46.0 3.43e-01 93.9% 57.9%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 39.0 3.10e-01 89.8% 35.2%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.53 48.0 3.77e-01 100.0% 87.1%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 3.17e-01 98.0% 69.9%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.32e-01 77.6% 54.7%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 42.0 3.31e-01 93.9% 79.6%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 43.0 3.68e-01 89.8% 81.6%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 37.0 3.39e-01 93.9% 56.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3918171 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 58.0 4.78e-01 100.0% 94.0%
4236239 11.1.1.1199 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30703 0.67 55.0 4.95e-01 100.0% 94.7%
3572351 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.66 55.0 4.13e-01 100.0% 57.0%
3233041 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.65 54.0 4.24e-01 100.0% 61.3%
3992928 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.65 55.0 4.25e-01 100.0% 62.5%
3919578 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.65 53.0 3.99e-01 100.0% 55.7%
2604943 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.64 53.0 3.96e-01 100.0% 54.9%
3479219 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.64 53.0 4.03e-01 100.0% 56.3%
4028385 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.64 52.0 3.80e-01 100.0% 47.7%
3574801 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.63 52.0 4.14e-01 100.0% 65.2%
5039870 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.63 53.0 4.33e-01 100.0% 72.0%
2534087 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.63 52.0 4.24e-01 100.0% 67.6%
3519024 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.63 53.0 4.27e-01 100.0% 67.6%
3251958 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.62 51.0 4.15e-01 100.0% 70.4%
3452536 11.1.1.851 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26192 0.62 51.0 3.69e-01 100.0% 76.4%
3213820 11.1.1.851 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26192 0.62 50.0 3.67e-01 100.0% 72.5%
5078864 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.62 51.0 4.11e-01 100.0% 76.4%
3621871 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.62 50.0 3.85e-01 100.0% 56.3%
3688400 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.62 51.0 3.77e-01 100.0% 71.0%
5040377 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.62 52.0 4.11e-01 100.0% 64.6%
4270851 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.62 50.0 4.08e-01 100.0% 74.3%
3185924 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.62 50.0 3.65e-01 100.0% 54.0%
3938167 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.62 50.0 3.72e-01 100.0% 51.4%
3500008 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.61 49.0 3.70e-01 100.0% 52.3%
3676877 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.61 49.0 3.48e-01 100.0% 56.3%
3743148 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.61 50.0 3.74e-01 100.0% 53.1%
4609533 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 4.38e-01 100.0% 78.8%
3655163 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.61 50.0 4.70e-01 100.0% 86.2%
3998723 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.61 48.0 4.21e-01 100.0% 84.4%
3996024 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.61 49.0 3.68e-01 100.0% 58.0%
3975917 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.61 50.0 4.15e-01 100.0% 72.0%
3555174 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.60 48.0 3.96e-01 100.0% 70.5%
3225756 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.60 48.0 3.49e-01 100.0% 60.0%
3397990 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.59 48.0 3.96e-01 100.0% 66.7%
3400863 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.59 48.0 3.81e-01 100.0% 58.3%
3836084 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.59 48.0 3.92e-01 100.0% 82.9%
3502161 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.58 46.0 3.69e-01 100.0% 63.3%
1487480 4011.1.1.0 ↗ beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.58 40.0 3.50e-01 73.5% 79.7%
146656 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.58 47.0 3.76e-01 100.0% 75.7%
3232627 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.58 47.0 3.38e-01 100.0% 61.1%
3926630 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.57 46.0 3.73e-01 100.0% 66.1%
3882550 11.1.1.851 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26192 0.57 47.0 3.25e-01 100.0% 66.7%
3236722 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.57 45.0 3.64e-01 100.0% 63.3%
3796299 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.57 45.0 3.67e-01 100.0% 60.9%
3876360 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.56 44.0 3.47e-01 100.0% 53.3%
4052006 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.56 44.0 3.71e-01 87.8% 90.6%
3742761 243.1.1.41 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.55 42.0 3.25e-01 85.7% 73.9%
4634766 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.50 43.0 3.05e-01 100.0% 84.4%
D2 high residues 99-199
PDB
D3 medium residues 200-253_317-378_433-461
PDB
Domain cluster: rep: E1_protein__NP_740661__Sleeping_disease_virus__78540__D1-45_130-191_222-309
D4 medium residues 254-316
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009268865__Emaravirus_toordali__1980430__D252-306
D5 medium residues 462-558
PDB
Domain cluster: rep: putative_glycoprotein_precursor__YP_010088066__Emaravirus_cordylinae__2099567__D574-632