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glycoprotein
Euk-VirAlmendravirus_cootbay
glycoprotein__YP_010229211__Almendravirus_cootbay__1972685
Identity
- Accession:
- YP_010229211 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
71.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Almendravirus›
Almendravirus_cootbay
TaxID: 1972685
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-30_258-380
D2
medium
residues 31-65_169-257
Domain cluster:
rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.68 | 50.0 | 5.62e-01 | 90.3% | 98.9% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.63 | 45.0 | 5.09e-01 | 90.3% | 98.9% |
| 1z87A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 43.0 | 4.71e-01 | 83.9% | 96.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3388895 | 220.1.1.170 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin | 0.60 | 44.0 | 4.68e-01 | 88.7% | 85.5% |
| 3636379 | 220.1.1.203 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_23 | 0.57 | 50.0 | 4.66e-01 | 93.5% | 78.7% |
| 3510368 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.54 | 45.0 | 3.90e-01 | 89.5% | 85.8% |
| 3231960 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.54 | 46.0 | 3.88e-01 | 92.7% | 99.5% |
| 5014865 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 41.0 | 4.26e-01 | 96.8% | 94.8% |
D3
medium
residues 66-168
Domain cluster:
representative
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.70 | 63.0 | 5.80e-01 | 100.0% | 80.3% |
| 4330210 | 327.6.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin | 0.54 | 41.0 | 3.12e-01 | 81.6% | 81.9% |
| 3789329 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 34.0 | 2.86e-01 | 70.9% | 46.1% |