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glycoprotein
Euk-VirAlmendravirus_chico
glycoprotein__YP_010229224__Almendravirus_chico__1972687
Identity
- Accession:
- YP_010229224 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
70.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Almendravirus›
Almendravirus_chico
TaxID: 1972687
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-29_264-375
D2
high
residues 36-52_181-236
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.72 | 64.0 | 5.85e-01 | 100.0% | 74.7% |
| 1zc3B00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.69 | 62.0 | 5.40e-01 | 100.0% | 75.2% |
| 1k5dB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.66 | 57.0 | 4.65e-01 | 100.0% | 66.4% |
| 2yk0A03 | 1.20.58.1930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 51.0 | 3.62e-01 | 84.9% | 52.0% |
| 1v61A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 57.0 | 4.75e-01 | 100.0% | 61.4% |
| 2da0A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 58.0 | 4.95e-01 | 98.6% | 64.0% |
| 1e2tA03 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.64 | 56.0 | 4.87e-01 | 100.0% | 76.9% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.62 | 55.0 | 5.12e-01 | 100.0% | 78.5% |
| 1wvhA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 52.0 | 4.38e-01 | 95.9% | 84.1% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 51.0 | 4.27e-01 | 100.0% | 77.1% |
| 4ifsA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.60 | 53.0 | 4.40e-01 | 100.0% | 59.8% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 51.0 | 4.00e-01 | 97.3% | 65.6% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 50.0 | 4.24e-01 | 100.0% | 62.7% |
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 50.0 | 4.49e-01 | 97.3% | 69.2% |
| 3f6zB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.58 | 52.0 | 5.07e-01 | 100.0% | 96.2% |
| 4ioyX01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.58 | 50.0 | 4.18e-01 | 97.3% | 66.4% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 32.0 | 3.07e-01 | 71.2% | 47.0% |
| 3e4wA02 | 2.40.180.10 | Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain | 0.57 | 50.0 | 3.65e-01 | 100.0% | 84.1% |
| 4qa8A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.56 | 43.0 | 3.09e-01 | 82.2% | 66.7% |
| 3qdrB00 | 2.30.30.970 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 36.0 | 3.97e-01 | 89.0% | 95.9% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 32.0 | 3.28e-01 | 94.5% | 58.1% |
| 2cm4A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 43.0 | 3.58e-01 | 95.9% | 65.5% |
| 4b8eB00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.52 | 37.0 | 2.76e-01 | 75.3% | 87.0% |
| 1v5pA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 43.0 | 3.97e-01 | 98.6% | 82.5% |
| 1mbmA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 34.0 | 3.43e-01 | 90.4% | 68.4% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3638833 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.70 | 62.0 | 4.42e-01 | 100.0% | 48.6% |
| 3473227 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 59.0 | 4.50e-01 | 100.0% | 51.5% |
| 3991351 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.66 | 58.0 | 4.65e-01 | 100.0% | 60.0% |
| 4001931 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 57.0 | 4.72e-01 | 100.0% | 64.4% |
| 3491998 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 56.0 | 4.62e-01 | 100.0% | 60.0% |
| 3388895 | 220.1.1.170 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin | 0.64 | 55.0 | 4.81e-01 | 100.0% | 63.6% |
| 3174481 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.63 | 56.0 | 4.38e-01 | 100.0% | 58.7% |
| 3275991 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 55.0 | 4.55e-01 | 100.0% | 67.4% |
| 3573862 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 54.0 | 3.95e-01 | 100.0% | 43.8% |
| 3231960 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.62 | 53.0 | 3.93e-01 | 100.0% | 36.6% |
| 3929073 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 54.0 | 4.68e-01 | 100.0% | 81.7% |
| 3263018 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 53.0 | 4.78e-01 | 95.9% | 78.0% |
| 3936376 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 51.0 | 4.39e-01 | 95.9% | 79.2% |
| 3391427 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 50.0 | 4.63e-01 | 95.9% | 100.0% |
| 3698484 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 54.0 | 4.21e-01 | 100.0% | 75.5% |
| 3785249 | 220.1.1.71 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 | 0.60 | 51.0 | 4.58e-01 | 100.0% | 74.5% |
| 3237594 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.60 | 53.0 | 4.37e-01 | 100.0% | 76.9% |
| 3520566 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.60 | 52.0 | 4.01e-01 | 100.0% | 65.1% |
| 3966647 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.58 | 51.0 | 4.73e-01 | 100.0% | 88.4% |
| 4003142 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 47.0 | 3.35e-01 | 94.5% | 47.2% |
| 3622158 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.57 | 48.0 | 3.50e-01 | 95.9% | 53.0% |
| 3698929 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.55 | 41.0 | 3.22e-01 | 86.3% | 35.9% |
| 3869833 | 109.4.1.3457 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HPS3_N, HPS3_C | 0.54 | 41.0 | 2.97e-01 | 83.6% | 79.6% |
| 3487098 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.54 | 48.0 | 3.66e-01 | 100.0% | 48.2% |
| 3478759 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.54 | 47.0 | 3.58e-01 | 100.0% | 46.1% |
| 3248299 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.53 | 37.0 | 2.32e-01 | 97.3% | 10.7% |
| 3596310 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 45.0 | 2.89e-01 | 98.6% | 31.5% |
| 3244836 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 40.0 | 3.38e-01 | 83.6% | 100.0% |
| 3329474 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 37.0 | 2.33e-01 | 74.0% | 81.2% |
| 3494939 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.52 | 46.0 | 3.33e-01 | 100.0% | 41.4% |
| 5054088 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.52 | 37.0 | 2.58e-01 | 74.0% | 67.9% |
| 3501377 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.52 | 39.0 | 2.96e-01 | 100.0% | 33.5% |
| 3244422 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 3.08e-01 | 79.5% | 86.7% |
D3
high
residues 57-171
Domain cluster:
rep: glycoprotein__YP_009094440__Sunguru_virus__1491491__D75-143
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00974.25 best | Rhabdo_glycop_FD | 35.9 | 1.40e-08 | 85.2% | 100.0% |