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glycoprotein_precursor,_partial

Euk-Vir

Artashat_orthonairovirus

glycoprotein_precursor,_partial__YP_009666121__Artashat_orthonairovirus__2170061

Identity

Accession:
YP_009666121 ↗
Protein ID:
glycoprotein_precursor,_partial
Kingdom:
euk

Quality

64.4 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Nairoviridae› Orthonairovirus› Orthonairovirus_artashatense

TaxID: 2170061

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 449-519
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551599__Avalon_virus__1810950__D436-501
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20726.3 best Nairovirus_Gn 43.5 2.90e-11 100.0% 20.5%
D2 medium residues 242-361_383-441
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551658__Great_Saltee_virus__1810946__D191-359_380-396
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20726.3 best Nairovirus_Gn 37.6 1.90e-09 34.1% 17.4%
D3 medium residues 548-698
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20726.3 best Nairovirus_Gn 64.2 1.50e-17 100.0% 46.9%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.71 38.0 4.42e-01 90.1% 70.5%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.70 39.0 4.54e-01 89.4% 75.2%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.69 26.0 3.05e-01 100.0% 48.2%
3rbtA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 27.0 3.05e-01 76.2% 45.3%
1sziA02 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.67 33.0 3.49e-01 84.1% 52.6%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 33.0 3.99e-01 88.1% 72.0%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.64 29.0 3.69e-01 84.1% 70.0%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.64 31.0 3.30e-01 83.4% 50.7%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 29.0 3.53e-01 88.7% 65.6%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 30.0 3.60e-01 86.1% 68.3%
4al0A00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.60 37.0 3.83e-01 90.7% 63.7%
3fhnA04 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.59 32.0 3.46e-01 82.1% 58.0%
3b77B02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 33.0 4.17e-01 90.1% 94.3%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 32.0 3.63e-01 81.5% 70.9%
2vebA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 29.0 2.67e-01 100.0% 37.4%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.55 37.0 3.95e-01 93.4% 77.7%
4d8mA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.53 35.0 3.15e-01 89.4% 47.2%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 34.0 3.26e-01 80.1% 57.2%
3b8mC02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 34.0 4.00e-01 84.1% 96.2%
7cm3A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 42.0 4.17e-01 88.1% 99.4%
4nqiD00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.50 36.0 3.10e-01 100.0% 47.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030224 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.69 41.0 4.36e-01 94.7% 65.9%
4136906 5069.1.3.1 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.67 35.0 3.91e-01 84.1% 62.5%
3704762 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.66 31.0 3.44e-01 82.8% 54.4%
4027540 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.65 39.0 3.87e-01 93.4% 55.6%
3770290 4177.1.1.41 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › EVC2_like 0.63 42.0 3.87e-01 92.1% 51.8%
3608949 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 33.0 3.38e-01 86.1% 53.8%
3775375 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 35.0 3.52e-01 90.7% 55.3%
3591771 611.8.1.0 ↗ alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 0.61 36.0 3.69e-01 92.1% 60.0%
3973242 5038.2.1.1 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.60 37.0 3.87e-01 88.1% 66.2%
3805085 611.8.1.0 ↗ alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 0.60 34.0 3.39e-01 90.7% 53.5%
4280536 320.4.1.1 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › TIMELESS_C 0.60 24.0 2.78e-01 76.2% 45.2%
4362095 1073.1.1.42 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › EVC2_like 0.59 41.0 3.69e-01 96.7% 51.2%
5045481 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.58 32.0 2.96e-01 89.4% 41.0%
3757569 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 31.0 3.35e-01 83.4% 61.5%
3567180 4177.1.1.61 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PLC-beta_C 0.55 44.0 3.83e-01 100.0% 53.8%
3477366 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.55 35.0 3.93e-01 80.8% 80.8%
4589656 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.55 38.0 3.90e-01 98.0% 73.8%
3963675 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.54 39.0 4.42e-01 85.4% 100.0%
3787788 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 33.0 2.95e-01 89.4% 39.6%
3998504 5057.1.1.13 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Strabismus 0.53 33.0 3.32e-01 96.7% 59.3%
3426522 3562.1.1.11 ↗ alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › PGG 0.53 33.0 3.46e-01 84.8% 68.1%
3742628 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 37.0 3.71e-01 96.0% 70.1%
4024355 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.52 43.0 3.52e-01 88.1% 58.8%
4975983 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.51 34.0 3.47e-01 91.4% 69.0%
3464517 3562.1.1.11 ↗ alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › PGG 0.50 32.0 3.12e-01 91.4% 55.0%
4942757 606.1.1.1 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.50 33.0 3.84e-01 83.4% 94.3%
4939717 3758.2.1.1 ↗ alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.50 36.0 3.39e-01 82.8% 58.0%
D4 medium residues 771-853
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009300678__Shayang_Spider_Virus_1__1608068__D808-883
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01561.22 best Hanta_Gc_N 31.6 1.30e-07 74.7% 17.8%
D5 medium residues 1146-1262
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009227121__Tofla_virus__1615758__D1194-1292
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20682.4 best Hanta_Gc_C 57.3 2.60e-15 100.0% 50.2%