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glycoprotein_precursor
Euk-VirMachupo_mammarenavirus
glycoprotein_precursor__NP_899212__Machupo_mammarenavirus__11628
Identity
- Accession:
- NP_899212 ↗
- Protein ID:
- glycoprotein_precursor
- Kingdom:
- euk
Quality
59.8
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Mammarenavirus_machupoense
TaxID: 11628
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 77-249
Domain cluster:
rep: glycoprotein_precursor__YP_001816782__Chapare_mammarenavirus__499556__D79-239
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3akjA01 | 3.30.200.120 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.61 | 26.0 | 3.85e-01 | 79.2% | 90.5% |
| 4bjjB00 | 2.60.40.4370 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 23.0 | 3.20e-01 | 85.0% | 71.8% |
| 2q83B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 28.0 | 3.59e-01 | 78.6% | 78.8% |
| 1u5qA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 30.0 | 3.82e-01 | 71.7% | 94.8% |
| 1oypA01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.52 | 37.0 | 3.44e-01 | 71.1% | 89.7% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 32.0 | 3.71e-01 | 71.7% | 84.4% |
| 6cqeA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 23.0 | 3.17e-01 | 85.0% | 84.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2085444 | 3081.1.1.0 ↗ | a+b complex topology › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 | 0.94 | 75.0 | 8.37e-01 | 89.0% | 100.0% |
| 119427 | 3081.1.1.0 ↗ | a+b complex topology › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 | 0.92 | 81.0 | 8.59e-01 | 93.1% | 100.0% |
| 3627577 | 59.1.1.6 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIIC_sub6 | 0.56 | 22.0 | 3.22e-01 | 79.8% | 76.5% |
| 4205746 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.55 | 32.0 | 4.04e-01 | 71.1% | 94.3% |
| 5065185 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 29.0 | 3.86e-01 | 88.4% | 96.7% |
| 3660837 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 24.0 | 3.41e-01 | 80.9% | 84.7% |
| 4927597 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 28.0 | 3.19e-01 | 77.5% | 63.2% |
| 3959682 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 21.0 | 3.18e-01 | 88.4% | 82.7% |
| 3290463 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 36.0 | 4.01e-01 | 97.1% | 86.7% |
| 5073134 | 241.11.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF5655 | 0.53 | 30.0 | 3.64e-01 | 87.3% | 84.3% |
| 3268927 | 59.1.1.2 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 | 0.52 | 23.0 | 3.45e-01 | 79.8% | 96.0% |
| 2988816 | 241.6.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc | 0.52 | 38.0 | 3.71e-01 | 86.1% | 67.7% |
| 3964190 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.52 | 29.0 | 2.96e-01 | 76.9% | 53.9% |
| 3785854 | 305.2.1.1 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a | 0.52 | 28.0 | 3.36e-01 | 77.5% | 78.9% |
| 4039974 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 27.0 | 3.23e-01 | 75.7% | 74.8% |
| 4064719 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.51 | 30.0 | 3.74e-01 | 71.1% | 96.2% |
| 4937023 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.51 | 30.0 | 3.77e-01 | 93.1% | 100.0% |
| 4961351 | 242.1.1.10 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › PF26411 | 0.50 | 32.0 | 3.89e-01 | 72.3% | 100.0% |
| 4086765 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.50 | 31.0 | 3.72e-01 | 72.3% | 94.5% |
| 3602142 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.50 | 31.0 | 3.78e-01 | 72.8% | 99.0% |