←Back to structures
glycoprotein_precursor
Euk-VirBear_Canyon_mammarenavirus
glycoprotein_precursor__YP_001649226__Bear_Canyon_mammarenavirus__192848
Identity
- Accession:
- YP_001649226 ↗
- Protein ID:
- glycoprotein_precursor
- Kingdom:
- euk
Quality
67.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Mammarenavirus_bearense
TaxID: 192848
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 79-241
Domain cluster:
rep: glycoprotein_precursor__YP_001816782__Chapare_mammarenavirus__499556__D79-239
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 35.0 | 3.98e-01 | 95.7% | 82.3% |
| 3hlzB01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.53 | 36.0 | 3.88e-01 | 96.9% | 79.3% |
| 3lwsF02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 31.0 | 3.69e-01 | 85.3% | 91.3% |
| 1dcoA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.51 | 27.0 | 3.36e-01 | 89.6% | 82.8% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.50 | 40.0 | 3.47e-01 | 84.0% | 90.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2393530 | 3081.1.1.0 ↗ | a+b complex topology › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 | 0.87 | 74.0 | 7.81e-01 | 90.2% | 97.3% |
| 5032337 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 30.0 | 4.06e-01 | 75.5% | 95.0% |
| 4997777 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.58 | 30.0 | 3.91e-01 | 87.1% | 92.9% |
| 5031915 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 28.0 | 3.62e-01 | 90.2% | 88.2% |
| 4971295 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.55 | 31.0 | 3.90e-01 | 74.8% | 92.6% |
| 3468140 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.54 | 27.0 | 3.60e-01 | 89.6% | 87.8% |
| 1286181 | 881.1.1.7 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3805 | 0.53 | 36.0 | 3.92e-01 | 96.9% | 81.6% |
| 3290652 | 306.2.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor | 0.53 | 29.0 | 3.70e-01 | 87.1% | 94.4% |
| 3950413 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.53 | 34.0 | 4.01e-01 | 79.8% | 95.5% |
| 4669668 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.52 | 28.0 | 3.36e-01 | 84.7% | 79.0% |
| 4545902 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 28.0 | 3.65e-01 | 82.2% | 94.4% |
| 4937023 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.52 | 32.0 | 3.84e-01 | 89.6% | 97.0% |
| 4142602 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 30.0 | 3.68e-01 | 89.0% | 91.0% |
| 3953208 | 305.2.1.1 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a | 0.51 | 27.0 | 3.37e-01 | 83.4% | 86.2% |
| 3816023 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.51 | 26.0 | 3.54e-01 | 71.8% | 100.0% |
D2
high
residues 420-480
Domain cluster:
rep: glycoprotein__YP_009508471__Ryukyu_mammarenavirus__2169995__D450-496
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00798.24 best | Arena_glycoprot | 82.5 | 3.90e-23 | 90.2% | 11.0% |
D3
medium
residues 290-358