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glycoprotein_precursor
Euk-VirMariental_mammarenavirus
glycoprotein_precursor__YP_009141003__Mariental_mammarenavirus__1642436
Identity
- Accession:
- YP_009141003 ↗
- Protein ID:
- glycoprotein_precursor
- Kingdom:
- euk
Quality
57.3
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Mammarenavirus_marientalense
TaxID: 1642436
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 78-248
Domain cluster:
rep: glycoprotein_precursor__YP_001816782__Chapare_mammarenavirus__499556__D79-239
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00798.24 best | Arena_glycoprot | 196.8 | 8.40e-58 | 100.0% | 34.0% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kvpA00 | 6.20.140.10 | Special › Other non-globular › Immunoglobulin-like › | 0.70 | 19.0 | 3.84e-01 | 88.3% | 95.3% |
| 3hl6A01 | 3.30.1300.50 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Putative mobile pathogenicity island, N-terminal domain | 0.59 | 19.0 | 2.80e-01 | 89.5% | 62.2% |
| 4bjjB00 | 2.60.40.4370 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 21.0 | 2.91e-01 | 88.9% | 69.4% |
| 3hxlA05 | 3.30.360.90 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.52 | 23.0 | 3.41e-01 | 77.8% | 100.0% |
| 2dpmA02 | 1.10.1020.10 | Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 | 0.50 | 28.0 | 3.43e-01 | 97.7% | 86.4% |
| 1jqpA01 | 2.40.128.80 | Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain | 0.50 | 22.0 | 2.71e-01 | 98.8% | 61.6% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2803600 | 3081.1.1.1 ↗ | a+b complex topology › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Arena_glycoprot | 0.89 | 77.0 | 7.53e-01 | 100.0% | 83.2% |
| 4871275 | 3081.1.1.1 ↗ | a+b complex topology › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Arena_glycoprot | 0.81 | 58.0 | 6.59e-01 | 78.4% | 93.9% |
| 2085444 | 3081.1.1.0 ↗ | a+b complex topology › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 | 0.72 | 58.0 | 6.29e-01 | 93.6% | 100.0% |
| 119427 | 3081.1.1.0 ↗ | a+b complex topology › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 | 0.69 | 60.0 | 6.30e-01 | 95.3% | 100.0% |
| 3278555 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.68 | 32.0 | 3.47e-01 | 87.7% | 53.1% |
| 4965008 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.58 | 28.0 | 3.49e-01 | 77.8% | 73.3% |
| 5013170 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.58 | 28.0 | 3.70e-01 | 78.9% | 85.6% |
| 4942107 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.57 | 28.0 | 3.31e-01 | 78.9% | 65.0% |
| 4950811 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.56 | 27.0 | 3.65e-01 | 78.4% | 86.7% |
| 5002856 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.56 | 28.0 | 3.26e-01 | 78.9% | 65.8% |
| 4944753 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 27.0 | 3.66e-01 | 78.4% | 91.8% |
| 4930172 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.54 | 27.0 | 3.24e-01 | 78.9% | 69.6% |
| 5058653 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 28.0 | 3.28e-01 | 80.1% | 69.2% |
| 4927944 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 26.0 | 3.36e-01 | 78.9% | 79.0% |
| 4964679 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.52 | 26.0 | 3.19e-01 | 78.9% | 75.2% |
| 4931494 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.51 | 27.0 | 3.53e-01 | 86.0% | 91.6% |
| 4994455 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 27.0 | 3.40e-01 | 87.1% | 87.0% |
| 3788010 | 59.1.1.10 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 | 0.50 | 20.0 | 2.59e-01 | 84.8% | 60.0% |
D2
high
residues 432-492
Domain cluster:
rep: glycoprotein__YP_009508471__Ryukyu_mammarenavirus__2169995__D450-496
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00798.24 best | Arena_glycoprot | 98.1 | 7.30e-28 | 90.2% | 11.4% |