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glycoprotein_precursor

Euk-Vir

Nyando_virus

glycoprotein_precursor__YP_009362065__Nyando_virus__35316

Identity

Accession:: YP_009362065 ↗
Protein ID:: glycoprotein_precursor
Kingdom:: euk

Quality

74.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Peribunyaviridae› Orthobunyavirus› Nyando_virus

TaxID: 35316

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 205-321

PDB

Domain cluster: rep: polyprotein__YP_009666976__San_Angelo_virus__45767__D199-326

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03563.19 best	Bunya_G2	147.3	7.90e-43	81.2%	33.8%

D2 high residues 363-463

PDB

D3 high residues 490-500_560-708

PDB

Domain cluster: rep: M_polyprotein__YP_009666885__Jamestown_Canyon_virus__35511__D547-717

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03557.22 best	Bunya_G1	93.0	2.10e-26	97.5%	16.7%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ma5A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.69	29.0	3.83e-01	90.6%	68.9%
7c1iA01	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.64	32.0	4.00e-01	92.5%	76.0%
2vkjA00	1.20.58.2030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	32.0	3.86e-01	91.9%	78.3%
4u7iA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.55	31.0	3.92e-01	81.9%	93.5%
5jrcA00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	33.0	3.17e-01	91.9%	51.1%
1sxjE03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.53	28.0	3.50e-01	96.2%	82.5%
3pwxA01	1.20.1330.10	Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain	0.51	29.0	2.82e-01	76.9%	47.3%
1iq0A03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.51	33.0	3.85e-01	91.3%	90.5%
1vctA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.51	30.0	3.55e-01	76.9%	85.3%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2504456	7069.1.1.1 ↗	alpha complex topology › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Bunya_G1	0.93	90.0	7.55e-01	100.0%	92.3%
2504457	7069.1.1.1 ↗	alpha complex topology › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Bunya_G1	0.91	81.0	7.09e-01	91.3%	91.4%
2504455	7069.1.1.1 ↗	alpha complex topology › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Bunya_G1	0.91	87.0	7.39e-01	100.0%	93.8%
2504453	7069.1.1.1 ↗	alpha complex topology › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Bunya_G1	0.80	75.0	6.41e-01	100.0%	85.4%
3214140	6155.1.1.2 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop	0.52	28.0	3.44e-01	78.1%	82.0%

D4 medium residues 20-85

PDB

Domain cluster: rep: Glycoprotein_precursor__YP_010086209__Caimito_virus__2572766__D29-112

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03563.19 best	Bunya_G2	60.1	2.80e-16	100.0%	22.8%

D5 medium residues 86-173

PDB

Domain cluster: rep: polyprotein__YP_009667022__Witwatersrand_virus__1678231__D115-177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03563.19 best	Bunya_G2	108.1	6.90e-31	100.0%	31.3%

D6 medium residues 709-748_800-817

PDB

Domain cluster: representative

D7 medium residues 949-1007_1092-1132

PDB

Domain cluster: rep: polyprotein__YP_009666984__Potosi_virus__273360__D951-1029_1099-1130

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03557.22 best	Bunya_G1	69.0	4.00e-19	62.0%	7.0%
PF03557.22	Bunya_G1	36.3	3.00e-09	43.0%	4.8%

D8 medium residues 1008-1091_1133-1217

PDB

Domain cluster: rep: polyprotein__YP_009507882__Kairi_virus__80939__D1016-1096_1138-1232

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03557.22 best	Bunya_G1	141.9	3.60e-41	51.5%	9.8%
PF03557.22	Bunya_G1	164.8	4.30e-48	50.9%	9.7%

D9 medium residues 1360-1432

PDB