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glycoprotein_precursor
Euk-VirArenaviridae_sp._13ZR68
glycoprotein_precursor__YP_009505808__Arenaviridae_sp._13ZR68__1518603
Identity
- Accession:
- YP_009505808 ↗
- Protein ID:
- glycoprotein_precursor
- Kingdom:
- euk
Quality
64.9
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Arenaviridae_sp._13ZR68
TaxID: 1518603
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 76-251
Domain cluster:
rep: glycoprotein_precursor__YP_001816782__Chapare_mammarenavirus__499556__D79-239
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00798.24 best | Arena_glycoprot | 197.2 | 6.20e-58 | 100.0% | 35.4% |
D2
medium
residues 1-53_433-492
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00798.24 best | Arena_glycoprot | 94.3 | 1.00e-26 | 50.4% | 11.2% |
| PF00798.24 | Arena_glycoprot | 72.7 | 3.50e-20 | 47.8% | 11.0% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gzrB00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.83 | 33.0 | 4.05e-01 | 98.2% | 57.1% |
| 4q20A01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.78 | 35.0 | 4.11e-01 | 73.5% | 59.8% |
| 3rh3A01 | 1.20.120.930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 | 0.54 | 39.0 | 3.74e-01 | 74.3% | 70.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3205388 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.76 | 42.0 | 3.23e-01 | 92.0% | 26.0% |
| 3729252 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.73 | 37.0 | 3.70e-01 | 85.0% | 47.8% |
| 5058990 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.70 | 37.0 | 3.63e-01 | 85.8% | 47.2% |
| 5059279 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.61 | 42.0 | 4.95e-01 | 92.0% | 100.0% |
| 4397666 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 44.0 | 3.83e-01 | 98.2% | 57.6% |
| 3611163 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.52 | 46.0 | 3.06e-01 | 97.3% | 37.5% |
| 4008078 | 601.4.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TarH | 0.50 | 46.0 | 3.96e-01 | 100.0% | 86.9% |