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glycoprotein_precursor

Euk-Vir

Zirqa_virus_Viruses.

glycoprotein_precursor__YP_009551665__Zirqa_virus_Viruses.__X

Identity

Accession:
YP_009551665 ↗
Protein ID:
glycoprotein_precursor
Kingdom:
euk

Quality

64.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 847-858_919-931_976-1118
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01561.22 best Hanta_Gc_N 69.0 5.50e-19 88.1% 40.2%
D2 medium residues 184-224_250-318_398-451
PDB
D3 medium residues 225-249_319-362
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sigA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.62 53.0 3.54e-01 94.2% 69.4%
6vfqA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.62 45.0 3.85e-01 78.3% 94.7%
7skhB01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.60 42.0 3.78e-01 72.5% 96.9%
3ubgB01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.60 42.0 3.80e-01 73.9% 100.0%
3t1oA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 3.37e-01 91.3% 55.7%
3oq3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.59e-01 78.3% 98.0%
1l3wA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.55 40.0 3.44e-01 78.3% 91.2%
3oguA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 43.0 3.63e-01 87.0% 67.5%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 42.0 3.28e-01 82.6% 54.0%
2clsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 3.25e-01 88.4% 51.4%
1h6uA03 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.52e-01 79.7% 81.6%
3clvA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 3.24e-01 88.4% 57.7%
3o4oC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.93e-01 97.1% 98.1%
5lddC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 3.30e-01 89.9% 55.4%
1io7A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 40.0 2.59e-01 85.5% 75.4%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.53 40.0 3.41e-01 85.5% 57.6%
2jksA02 2.60.40.1320 Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain 0.53 41.0 3.35e-01 85.5% 85.3%
4gafB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.69e-01 91.3% 98.1%
3fcmA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 46.0 3.39e-01 97.1% 76.1%
1c0pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 39.0 2.81e-01 79.7% 32.2%
3mgxB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 42.0 2.73e-01 97.1% 73.1%
3ttqA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 38.0 2.73e-01 82.6% 87.1%
2pkdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.32e-01 79.7% 100.0%
3ejbB01 3.30.43.20 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › 0.51 39.0 3.70e-01 87.0% 68.7%
4wiqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.46e-01 85.5% 96.2%
3wp4A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 40.0 2.87e-01 88.4% 48.2%
3regA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 3.09e-01 88.4% 54.4%
2e6jA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.14e-01 76.8% 87.5%
3nc3B00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 40.0 2.61e-01 94.2% 76.9%
3wo4C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.33e-01 76.8% 94.5%
3s79A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 41.0 2.59e-01 97.1% 76.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4012803 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 51.0 3.35e-01 92.8% 39.0%
3896215 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.61 47.0 3.53e-01 87.0% 58.9%
3625346 11.1.1.588 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fibulin_C 0.61 44.0 3.74e-01 79.7% 80.8%
5065314 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 3.81e-01 72.5% 93.7%
3475486 2004.1.1.132 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DLIC 0.60 50.0 3.26e-01 91.3% 33.0%
3483439 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 48.0 3.17e-01 88.4% 32.1%
5045694 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.59 50.0 3.51e-01 92.8% 54.1%
3259968 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.59 41.0 3.83e-01 72.5% 67.1%
3409533 2004.1.1.132 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DLIC 0.59 47.0 3.03e-01 88.4% 27.4%
4012767 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 51.0 3.30e-01 100.0% 38.6%
4025649 3156.3.1.0 beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family 0.58 42.0 3.63e-01 76.8% 91.8%
3513142 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 46.0 2.65e-01 88.4% 16.1%
3693663 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.57 50.0 3.17e-01 100.0% 35.7%
3940473 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.57 46.0 3.24e-01 88.4% 47.6%
3255895 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.57 50.0 3.20e-01 100.0% 37.0%
5078689 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.57 45.0 3.36e-01 88.4% 51.1%
3613387 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.57 45.0 3.14e-01 87.0% 53.6%
3969969 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 40.0 3.30e-01 75.4% 40.8%
5045317 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.57 46.0 3.45e-01 89.9% 52.8%
3592860 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.57 45.0 3.35e-01 89.9% 49.2%
None 0.56 45.0 2.67e-01 88.4% 17.1%
3249666 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.56 46.0 3.31e-01 91.3% 81.4%
3403658 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.56 45.0 3.15e-01 88.4% 56.2%
3264025 207.1.1.142 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6, LRR_8 0.56 46.0 2.71e-01 89.9% 20.5%
3780652 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 45.0 2.60e-01 88.4% 14.5%
3532940 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.56 45.0 3.21e-01 88.4% 47.1%
3470904 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.56 44.0 3.34e-01 89.9% 51.9%
3908592 2004.1.1.132 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DLIC 0.56 43.0 2.86e-01 88.4% 50.0%
3713423 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.56 45.0 3.26e-01 89.9% 48.8%
4504922 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.56 41.0 4.00e-01 79.7% 78.7%
3600530 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 44.0 3.21e-01 89.9% 48.8%
3175907 2004.1.1.54 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.55 44.0 2.84e-01 88.4% 46.7%
3244603 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.55 39.0 3.10e-01 75.4% 62.7%
5067896 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 44.0 3.25e-01 88.4% 50.5%
3249053 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 42.0 3.07e-01 88.4% 47.6%
4945137 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 44.0 3.11e-01 94.2% 63.7%
4017450 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 48.0 3.39e-01 100.0% 53.0%
4943012 810.1.1.0 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.53 42.0 3.52e-01 91.3% 98.5%
3709715 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.44e-01 79.7% 93.6%
4945419 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 42.0 2.99e-01 94.2% 46.0%
5050858 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 40.0 3.06e-01 88.4% 48.9%
3775613 2004.1.1.132 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DLIC 0.52 40.0 2.73e-01 88.4% 32.4%
4025203 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.52 41.0 3.36e-01 88.4% 50.7%
5078202 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 41.0 3.07e-01 88.4% 61.2%
3707717 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 2.82e-01 91.3% 37.8%
5051456 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 40.0 3.06e-01 89.9% 53.0%
5069206 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 44.0 3.23e-01 97.1% 62.2%
3991286 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 37.0 2.38e-01 78.3% 39.2%
4028849 3156.3.1.0 beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family 0.51 36.0 3.14e-01 78.3% 95.0%
4028419 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.51 40.0 3.00e-01 88.4% 35.6%
4996689 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.51 39.0 2.82e-01 88.4% 61.3%
3784046 59.1.2.1 beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC 0.51 39.0 3.24e-01 87.0% 79.3%
3600935 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.50 40.0 3.13e-01 88.4% 49.3%
1291948 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.50 43.0 3.37e-01 100.0% 50.6%
D4 medium residues 452-529
PDB
D5 medium residues 530-594_648-703
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20726.3 best Nairovirus_Gn 29.6 5.10e-07 67.8% 21.7%
D6 medium residues 595-647
PDB
D7 medium residues 783-844_932-975_1119-1143
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01561.22 best Hanta_Gc_N 26.7 4.10e-06 50.4% 17.8%
D8 medium residues 859-918
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01561.22 best Hanta_Gc_N 54.8 1.20e-14 98.3% 18.1%
D9 medium residues 1144-1252
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20682.4 best Hanta_Gc_C 31.0 2.80e-07 98.2% 40.2%