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glycoprotein_precursor

Euk-Vir

Batai_virus

glycoprotein_precursor__YP_009666905__Batai_virus__80942

Identity

Accession:
YP_009666905 ↗
Protein ID:
glycoprotein_precursor
Kingdom:
euk

Quality

74.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 384-471
PDB
D2 medium residues 114-178
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03563.19 best Bunya_G2 95.5 4.70e-27 100.0% 22.8%
D3 medium residues 201-333
PDB
D4 medium residues 476-586
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 51.5 7.70e-14 68.5% 8.3%
D5 medium residues 632-700
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 40.8 1.40e-10 100.0% 7.6%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 54.0 4.82e-01 75.4% 87.5%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.75 67.0 6.30e-01 100.0% 96.5%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.70 61.0 5.22e-01 100.0% 99.1%
4f91B04 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.69 53.0 4.18e-01 82.6% 77.5%
8alzB08 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.69 54.0 4.38e-01 85.5% 84.7%
6h2dS01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.68 54.0 3.88e-01 91.3% 85.7%
2pziB03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 55.0 4.28e-01 89.9% 88.7%
1td6A01 1.20.1480.10 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 0.67 56.0 4.98e-01 95.7% 72.5%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.66 48.0 4.25e-01 76.8% 83.7%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 49.0 4.58e-01 79.7% 85.9%
4ar9A02 1.10.390.20 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.64 49.0 3.85e-01 81.2% 82.4%
1lqsL01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.64 55.0 4.96e-01 100.0% 79.0%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.64 44.0 4.33e-01 73.9% 77.9%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 35.0 3.92e-01 100.0% 69.8%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.64 45.0 3.17e-01 76.8% 80.6%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 44.0 3.90e-01 75.4% 78.1%
2w4sA00 1.10.10.1440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain 0.63 46.0 4.33e-01 79.7% 81.4%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 44.0 3.61e-01 75.4% 68.3%
2uxwA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 42.0 3.43e-01 72.5% 73.8%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.60 47.0 4.55e-01 87.0% 75.6%
2w3cA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 44.0 2.96e-01 78.3% 45.7%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.58 49.0 4.44e-01 100.0% 68.5%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 44.0 3.95e-01 84.1% 68.3%
2wvxA04 1.20.1610.10 Mainly Alpha › Up-down Bundle › Glycosyl hydrolase family fold › alpha-1,2-mannosidases domains 0.58 45.0 3.34e-01 89.9% 33.5%
1d9cA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 45.0 3.88e-01 91.3% 66.1%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 47.0 4.13e-01 100.0% 65.2%
7xcnM01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.56 43.0 4.14e-01 82.6% 78.2%
4hzdB01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.56 44.0 3.67e-01 92.8% 67.2%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.55 45.0 4.45e-01 91.3% 94.4%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 47.0 3.50e-01 100.0% 38.4%
4bjmC00 1.20.58.1680 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 47.0 3.38e-01 100.0% 40.5%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 45.0 4.07e-01 98.6% 72.7%
3bh1A02 1.20.1570.10 Mainly Alpha › Up-down Bundle › dip2346 fold › dip2346 domain like 0.52 43.0 3.89e-01 94.2% 89.1%
3qsgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 44.0 3.72e-01 97.1% 65.2%
4lqkA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.51 42.0 3.49e-01 95.7% 53.8%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2504455 7069.1.1.1 alpha complex topology › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Bunya_G1 0.97 92.0 6.04e-01 100.0% 28.7%
3247352 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.74 66.0 5.44e-01 100.0% 77.6%
3666600 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 55.0 3.00e-01 78.3% 6.2%
4972733 611.2.1.0 alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) 0.73 49.0 4.26e-01 71.0% 73.4%
3773479 633.21.1.23 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.71 62.0 5.08e-01 100.0% 89.2%
3977082 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.69 59.0 4.93e-01 100.0% 83.2%
4940797 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 48.0 4.49e-01 73.9% 84.7%
3855165 604.6.1.65 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT, GGA_N-GAT 0.68 50.0 3.97e-01 76.8% 60.0%
3925930 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.67 48.0 4.23e-01 75.4% 78.0%
3828 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.67 50.0 4.23e-01 79.7% 69.6%
5032817 633.31.1.1 alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Pyruv_OxRed_insertion 0.66 55.0 5.71e-01 95.7% 100.0%
None 0.65 49.0 3.22e-01 79.7% 57.6%
3699782 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.65 49.0 4.29e-01 79.7% 82.0%
3470828 601.1.2.4 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4 0.65 56.0 4.61e-01 100.0% 83.8%
3530273 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.64 54.0 3.83e-01 100.0% 88.9%
3929377 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 45.0 4.21e-01 75.4% 80.0%
3389546 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.62 45.0 4.30e-01 76.8% 81.2%
3711335 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 50.0 3.42e-01 87.0% 40.0%
4990095 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.61 44.0 4.11e-01 75.4% 78.8%
3739008 109.4.1.128 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 0.61 50.0 3.35e-01 87.0% 45.8%
3296913 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.61 50.0 3.93e-01 95.7% 87.5%
3808989 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 42.0 3.79e-01 75.4% 74.0%
4986013 4994.1.1.0 alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like 0.60 42.0 4.03e-01 76.8% 81.2%
3963502 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.59 43.0 4.06e-01 100.0% 63.5%
3303117 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.57 40.0 3.79e-01 73.9% 96.5%
3992612 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.57 40.0 3.76e-01 76.8% 87.8%
3420386 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.55 44.0 4.08e-01 88.4% 74.4%
3996047 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.55 42.0 4.09e-01 95.7% 76.0%
4140504 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.54 38.0 3.47e-01 73.9% 82.1%
3517647 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.54 37.0 3.54e-01 73.9% 92.2%
3427035 622.1.1.30 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › PF26575 0.53 41.0 4.24e-01 89.9% 92.3%
5046322 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.53 39.0 3.73e-01 76.8% 92.5%
3178149 604.1.1.96 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Bap31 0.52 45.0 3.74e-01 92.8% 69.6%
3271988 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.52 43.0 4.25e-01 91.3% 89.0%
4955677 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.52 45.0 2.92e-01 100.0% 30.1%
D6 medium residues 746-822
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 52.4 4.00e-14 100.0% 8.7%
D7 medium residues 837-907
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 67.1 1.50e-18 100.0% 8.0%
D8 medium residues 955-1021_1088-1180_1202-1249
PDB
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 118.7 3.80e-34 45.7% 10.8%
PF03557.22 Bunya_G1 75.4 4.50e-21 32.7% 7.8%
PF03557.22 Bunya_G1 44.7 8.70e-12 23.6% 5.6%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.79 45.0 5.78e-01 93.3% 93.7%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.69 52.0 5.80e-01 99.5% 97.6%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 27.0 3.34e-01 96.2% 65.2%
6u7jA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 19.0 2.77e-01 98.6% 60.7%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 18.0 2.82e-01 87.5% 70.5%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.55 28.0 3.61e-01 99.0% 86.0%
1nqjB00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.52 24.0 3.13e-01 99.0% 74.6%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 27.0 3.40e-01 95.2% 81.9%
2rikA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 19.0 2.62e-01 98.6% 64.2%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 27.0 3.30e-01 95.2% 79.9%
4a5wA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 22.0 2.98e-01 100.0% 78.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3056811 5090.1.1.2 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Hanta_Gc_N 0.78 73.0 6.26e-01 98.6% 94.3%
2772148 5090.1.1.5 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2 0.72 66.0 5.59e-01 98.6% 98.2%
3712535 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.69 29.0 4.23e-01 84.1% 84.2%
5014673 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 28.0 4.35e-01 88.5% 97.5%
5028250 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.67 34.0 4.75e-01 97.1% 98.1%
5053966 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 21.0 3.28e-01 78.8% 82.4%
441034 3386.1.1.4 beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › T4_gp9_10_C 0.55 28.0 3.53e-01 99.0% 80.8%
4956007 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 18.0 2.49e-01 75.0% 56.2%
1833882 9.4.1.3 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.53 23.0 3.37e-01 86.1% 88.2%
4630707 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 24.0 3.17e-01 85.6% 80.0%
3569095 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.51 23.0 2.99e-01 99.5% 71.2%
3894563 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.51 27.0 3.35e-01 95.2% 81.2%
3937121 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.51 22.0 3.24e-01 88.0% 91.1%
4954877 11.1.1.531 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF11 0.51 23.0 3.10e-01 99.0% 79.1%
3274535 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 26.0 3.50e-01 94.2% 92.7%
3415072 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 26.0 3.20e-01 95.7% 75.0%
D9 medium residues 1050-1087_1181-1201
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 82.0 4.70e-23 64.4% 4.3%
PF03557.22 Bunya_G1 40.0 2.20e-10 42.4% 2.7%
D10 medium residues 1363-1434
PDB