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glycoprotein_precursor
Euk-VirCache_Valley_virus
glycoprotein_precursor__YP_009666951__Cache_Valley_virus__80935
Identity
- Accession:
- YP_009666951 ↗
- Protein ID:
- glycoprotein_precursor
- Kingdom:
- euk
Quality
75.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Peribunyaviridae›
Orthobunyavirus›
Cache_Valley_virus
TaxID: 80935
Cluster
View cluster (42 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 112-191
Domain cluster:
rep: polyprotein__YP_009667022__Witwatersrand_virus__1678231__D115-177
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03563.19 best | Bunya_G2 | 124.6 | 6.20e-36 | 100.0% | 28.5% |
D2
medium
residues 22-111_600-622
Domain cluster:
rep: Glycoprotein_precursor__YP_010086209__Caimito_virus__2572766__D29-112
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03563.19 best | Bunya_G2 | 95.7 | 4.00e-27 | 91.1% | 33.1% |
D3
medium
residues 220-330
D4
medium
residues 386-464
Domain cluster:
rep: polyprotein__YP_010085086__Anadyr_virus__1642852__D388-431_446-465
D5
medium
residues 483-571
Domain cluster:
rep: polyprotein__YP_010084299__California_encephalitis_virus__35305__D489-574
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03557.22 best | Bunya_G1 | 27.1 | 1.90e-06 | 71.9% | 7.2% |
D6
medium
residues 572-599_623-720
Domain cluster:
rep: M_polyprotein__YP_009666885__Jamestown_Canyon_virus__35511__D547-717
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03557.22 best | Bunya_G1 | 44.0 | 1.50e-11 | 81.0% | 10.1% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ph0C00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 28.0 | 3.92e-01 | 81.7% | 96.2% |
| 1ylmA00 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.57 | 43.0 | 4.18e-01 | 86.5% | 70.4% |
| 1elrA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 36.0 | 3.62e-01 | 92.1% | 60.9% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 38.0 | 4.47e-01 | 83.3% | 100.0% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.56 | 36.0 | 3.83e-01 | 81.7% | 72.3% |
| 3wd6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 40.0 | 4.16e-01 | 95.2% | 83.9% |
| 3m0fB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 41.0 | 4.17e-01 | 88.9% | 82.9% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.54 | 37.0 | 3.83e-01 | 84.1% | 74.8% |
| 2q00B00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 38.0 | 3.85e-01 | 78.6% | 75.4% |
| 2wglA00 | 1.10.4190.10 | Mainly Alpha › Orthogonal Bundle › Urease accessory protein UreF › Urease accessory protein UreF | 0.51 | 39.0 | 3.34e-01 | 80.2% | 95.7% |
| 6c7lA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.51 | 42.0 | 3.74e-01 | 92.1% | 74.4% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.50 | 36.0 | 3.84e-01 | 81.7% | 85.3% |
| 7qpgW01 | 1.10.357.150 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.50 | 38.0 | 3.39e-01 | 93.7% | 54.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2504455 | 7069.1.1.1 ↗ | alpha complex topology › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Bunya_G1 | 0.97 | 92.0 | 7.08e-01 | 96.8% | 60.4% |
| 2504457 | 7069.1.1.1 ↗ | alpha complex topology › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Bunya_G1 | 0.94 | 77.0 | 6.17e-01 | 84.1% | 58.4% |
| 2504456 | 7069.1.1.1 ↗ | alpha complex topology › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Bunya_G1 | 0.94 | 89.0 | 6.86e-01 | 98.4% | 59.3% |
| 3444192 | 601.18.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › Got1 | 0.58 | 43.0 | 4.20e-01 | 77.0% | 96.4% |
| 5041256 | 601.4.1.91 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › PF30769 | 0.58 | 39.0 | 4.23e-01 | 80.2% | 81.0% |
| 3659462 | 5069.1.1.10 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF4079 | 0.56 | 38.0 | 3.69e-01 | 83.3% | 60.4% |
| 3222485 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.55 | 45.0 | 3.96e-01 | 86.5% | 75.7% |
| 4935725 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.54 | 37.0 | 3.68e-01 | 84.9% | 65.2% |
| 5075377 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.54 | 30.0 | 3.42e-01 | 79.4% | 73.3% |
| 3964934 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.53 | 37.0 | 2.49e-01 | 72.2% | 88.5% |
| 3741893 | 109.4.1.195 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 | 0.53 | 31.0 | 3.26e-01 | 92.1% | 60.0% |
| 4055107 | 5050.1.1.14 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › ATG22 | 0.52 | 39.0 | 3.35e-01 | 77.0% | 99.5% |
| 3375388 | 604.6.1.2 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › ANTH | 0.50 | 39.0 | 3.90e-01 | 89.7% | 78.5% |
D7
medium
residues 728-823
Domain cluster:
rep: polyprotein__YP_009117085__Maprik_virus__1590836__D700-782
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03557.22 best | Bunya_G1 | 63.9 | 1.40e-17 | 100.0% | 10.7% |
D8
medium
residues 837-904
Domain cluster:
rep: polyprotein__YP_008709777__Murrumbidgee_virus__1406134__D787-850
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03557.22 best | Bunya_G1 | 64.0 | 1.20e-17 | 100.0% | 7.9% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 42.0 | 4.42e-01 | 97.1% | 77.8% |
| 1ay9A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.61 | 42.0 | 3.66e-01 | 95.6% | 45.4% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 39.0 | 4.35e-01 | 95.6% | 90.0% |
| 3vcaA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.60 | 48.0 | 4.05e-01 | 89.7% | 81.5% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.58 | 50.0 | 4.98e-01 | 95.6% | 100.0% |
| 7q04F01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.56 | 45.0 | 3.86e-01 | 88.2% | 87.2% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 37.0 | 3.67e-01 | 88.2% | 64.8% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.56 | 37.0 | 4.00e-01 | 88.2% | 80.7% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 37.0 | 3.42e-01 | 95.6% | 51.1% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 37.0 | 3.88e-01 | 88.2% | 76.2% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.53 | 42.0 | 3.61e-01 | 91.2% | 53.7% |
| 4ok4A02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 43.0 | 2.80e-01 | 94.1% | 40.4% |
| 2rcnA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 37.0 | 3.88e-01 | 82.4% | 82.0% |
| 2wg5F02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 36.0 | 3.85e-01 | 85.3% | 86.2% |
| 1f9cA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 42.0 | 3.62e-01 | 95.6% | 99.2% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.52 | 40.0 | 3.32e-01 | 88.2% | 68.1% |
| 1sbxA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.52 | 41.0 | 3.62e-01 | 89.7% | 84.0% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 44.0 | 3.59e-01 | 100.0% | 56.9% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 39.0 | 3.55e-01 | 97.1% | 59.6% |
| 3k6oA01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.51 | 39.0 | 3.88e-01 | 88.2% | 79.5% |
| 3ddmA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 42.0 | 3.56e-01 | 95.6% | 94.4% |
| 6dq2A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 41.0 | 2.86e-01 | 94.1% | 86.4% |
| 4dapA01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 38.0 | 3.66e-01 | 86.8% | 70.0% |
| 1l8rA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.50 | 41.0 | 3.64e-01 | 91.2% | 90.1% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3971219 | 11.9.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase | 0.74 | 45.0 | 3.01e-01 | 95.6% | 16.4% |
| 3970659 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 36.0 | 3.88e-01 | 85.3% | 63.3% |
| 4359927 | 2003.1.2.99 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 | 0.60 | 42.0 | 3.04e-01 | 73.5% | 81.0% |
| 3974596 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.60 | 36.0 | 3.87e-01 | 86.8% | 72.7% |
| 4620172 | 11.9.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase | 0.59 | 50.0 | 3.29e-01 | 95.6% | 66.6% |
| 2994196 | 4.10.1.0 ↗ | beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain | 0.59 | 49.0 | 4.89e-01 | 97.1% | 91.3% |
| 1606334 | 4.10.1.0 ↗ | beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain | 0.58 | 50.0 | 4.92e-01 | 95.6% | 97.2% |
| 4414202 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.58 | 37.0 | 2.87e-01 | 79.4% | 28.4% |
| 3921576 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.55 | 48.0 | 3.81e-01 | 98.5% | 71.4% |
| 3602009 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 38.0 | 3.10e-01 | 85.3% | 38.5% |
| 4131219 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.55 | 33.0 | 3.52e-01 | 73.5% | 66.7% |
| 4957465 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.53 | 36.0 | 2.53e-01 | 77.9% | 22.0% |
| 4930314 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.52 | 40.0 | 3.72e-01 | 97.1% | 65.9% |
| 3597376 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 36.0 | 3.06e-01 | 73.5% | 50.0% |
| 3914746 | 4.1.1.128 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_4 | 0.51 | 35.0 | 3.51e-01 | 94.1% | 70.0% |
| 4993659 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.50 | 35.0 | 2.86e-01 | 73.5% | 42.3% |
| 5036328 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 38.0 | 3.61e-01 | 85.3% | 83.5% |
| 3180337 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 42.0 | 3.20e-01 | 92.6% | 40.6% |
| 4093535 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 43.0 | 3.57e-01 | 100.0% | 64.6% |
| 4038412 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.50 | 36.0 | 3.66e-01 | 77.9% | 87.7% |
| 5000620 | 2.1.1.11 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a | 0.50 | 38.0 | 3.31e-01 | 83.8% | 80.0% |
| 5060637 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.50 | 35.0 | 2.91e-01 | 73.5% | 45.6% |
| 4994758 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.50 | 35.0 | 2.99e-01 | 73.5% | 50.0% |
D9
medium
residues 1244-1352
Domain cluster:
rep: glycoprotein_precursor__YP_009664619__Gouleako_virus__603003__D815-896
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03557.22 best | Bunya_G1 | 107.1 | 1.20e-30 | 100.0% | 12.6% |
D10
medium
residues 1364-1434