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glycoprotein_precursor

Euk-Vir

Estero_Real_virus

glycoprotein_precursor__YP_010085110__Estero_Real_virus__2170057

Identity

Accession:
YP_010085110 ↗
Protein ID:
glycoprotein_precursor
Kingdom:
euk

Quality

65.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 480-556
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20726.3 best Nairovirus_Gn 52.2 6.70e-14 100.0% 23.6%
D2 medium residues 186-236
PDB
D3 medium residues 237-382
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 46.0 4.41e-01 74.0% 97.0%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.63 37.0 4.70e-01 79.5% 100.0%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.61 44.0 4.08e-01 74.7% 85.7%
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 39.0 4.18e-01 83.6% 73.4%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 47.0 5.15e-01 84.9% 95.9%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 44.0 4.41e-01 73.3% 97.2%
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 37.0 4.44e-01 80.1% 97.8%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.57 39.0 4.39e-01 74.0% 91.0%
2hyxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 47.0 4.92e-01 87.0% 99.2%
3zm8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 41.0 4.33e-01 74.0% 95.3%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 40.0 4.14e-01 73.3% 97.8%
5e16A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 36.0 3.74e-01 84.9% 68.8%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 36.0 3.85e-01 84.2% 75.2%
2f68X02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.90e-01 75.3% 92.0%
1k12A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 39.0 3.85e-01 73.3% 92.4%
2wfpA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 36.0 4.32e-01 92.5% 100.0%
4rz7A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 36.0 3.87e-01 84.2% 79.3%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 37.0 4.29e-01 74.7% 98.1%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 4.05e-01 80.8% 85.1%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 34.0 4.07e-01 87.7% 100.0%
7wdtA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 39.0 3.88e-01 74.7% 96.0%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 37.0 4.28e-01 76.7% 99.1%
2okxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 3.92e-01 82.2% 91.8%
3h7jA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 39.0 4.38e-01 93.2% 100.0%
2qnkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 3.32e-01 85.6% 89.2%
2d40B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.15e-01 80.8% 96.1%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.95e-01 84.9% 100.0%
1xeuA02 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 30.0 3.67e-01 82.9% 98.8%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 37.0 4.18e-01 78.1% 100.0%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 33.0 3.90e-01 74.7% 100.0%
1jzdC00 2.60.40.1250 Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain 0.50 36.0 3.89e-01 75.3% 89.8%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 3.74e-01 76.0% 79.7%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3263682 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.68 38.0 4.96e-01 74.0% 100.0%
3255405 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 37.0 4.68e-01 74.7% 98.8%
1179927 10.12.1.28 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HutD 0.64 36.0 4.46e-01 72.6% 91.9%
1839907 10.32.1.54 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Thioredoxin_10 0.63 46.0 4.88e-01 74.7% 98.5%
3226838 10.32.1.21 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW 0.59 42.0 4.03e-01 74.7% 93.1%
3742224 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 4.59e-01 82.9% 98.1%
4935664 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 42.0 4.63e-01 92.5% 98.3%
3720242 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 4.24e-01 75.3% 96.0%
4989776 5095.1.1.0 beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen 0.53 40.0 3.43e-01 78.1% 71.1%
4197908 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 38.0 3.52e-01 75.3% 70.0%
3606042 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 41.0 3.84e-01 84.9% 95.1%
5056360 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 33.0 3.84e-01 78.1% 100.0%
3217929 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 40.0 4.08e-01 84.9% 95.2%
D4 medium residues 404-471
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a2aA02 3.30.1490.110 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 41.0 3.88e-01 75.0% 93.1%
3kptA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 3.14e-01 77.9% 88.7%
2jilA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 37.0 3.44e-01 75.0% 100.0%
7bysA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 3.18e-01 79.4% 45.9%
3mjgX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.22e-01 75.0% 86.1%
1d5yB03 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 36.0 2.77e-01 76.5% 40.5%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 28.0 2.57e-01 79.4% 34.4%
2wz8A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 38.0 3.02e-01 80.9% 44.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3609738 10.3.1.0 beta sandwiches › jelly-roll › TNF-like › TNF-like 0.55 44.0 3.22e-01 89.7% 96.0%
3478158 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 36.0 3.05e-01 70.6% 75.2%
5050287 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 42.0 3.90e-01 88.2% 77.8%
3535765 3519.1.1.1 beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p 0.52 41.0 3.58e-01 91.2% 100.0%
3232310 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.72e-01 88.2% 72.6%
3474520 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.39e-01 82.4% 77.1%
D5 medium residues 557-616
PDB
Domain cluster: representative
D6 medium residues 617-692
PDB
D7 medium residues 798-865_965-987_1127-1175
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01561.22 best Hanta_Gc_N 25.8 7.70e-06 66.4% 21.0%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.68 63.0 5.92e-01 99.3% 100.0%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.66 24.0 3.71e-01 89.3% 83.0%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 34.0 3.73e-01 95.0% 66.4%
3hvnA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.59 22.0 3.33e-01 89.3% 83.0%
4j3vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 25.0 2.84e-01 86.4% 51.4%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 24.0 2.72e-01 92.9% 48.6%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.55 32.0 3.59e-01 95.7% 74.3%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.55 20.0 3.05e-01 89.3% 81.1%
1smvC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.86e-01 88.6% 89.2%
2jbrA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.54 35.0 4.14e-01 96.4% 95.8%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.53 33.0 3.80e-01 92.9% 84.8%
4en2A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.53 33.0 3.73e-01 91.4% 83.7%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.68e-01 81.4% 90.2%
1tulA00 2.70.40.20 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Baculovirus telokin-like protein 20 0.51 29.0 3.23e-01 94.3% 70.6%
3kg8A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 33.0 3.47e-01 92.9% 71.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4958477 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 38.0 4.66e-01 77.1% 98.9%
4026698 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 23.0 2.99e-01 90.0% 65.3%
3830168 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 36.0 3.56e-01 94.3% 60.7%
3297150 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 24.0 2.83e-01 93.6% 53.0%
3229462 10.1.1.90 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29322 0.55 38.0 3.61e-01 93.6% 58.8%
3665101 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 27.0 3.48e-01 95.0% 81.2%
3481284 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.74e-01 97.1% 70.4%
5015035 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 28.0 3.33e-01 92.1% 73.3%
3494093 11.1.1.414 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM106 0.54 36.0 3.69e-01 97.1% 67.9%
1481962 4052.1.1.1 beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA_dh_M 0.54 37.0 4.26e-01 96.4% 98.0%
4034590 4052.1.1.0 beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.52 36.0 4.14e-01 95.7% 95.2%
3929117 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.51 33.0 3.72e-01 95.0% 83.6%
3177162 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 3.55e-01 93.6% 79.1%
3626743 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 3.18e-01 92.1% 57.3%
3495353 221.13.1.1 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain › DUF4140 0.51 38.0 3.81e-01 95.0% 76.4%
5044062 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.50 34.0 3.98e-01 92.9% 100.0%
D8 medium residues 866-879_936-964_988-1086_1105-1126
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01561.22 best Hanta_Gc_N 37.4 2.20e-09 73.8% 29.3%