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glycoprotein_precursor

Euk-Vir

Silverwater_virus

glycoprotein_precursor__YP_010086156__Silverwater_virus__1564099

Identity

Accession:
YP_010086156 ↗
Protein ID:
glycoprotein_precursor
Kingdom:
euk

Quality

72.6 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Uukuvirus› Silverwater_virus

TaxID: 1564099

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 296-396
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009304994__Wenzhou_Shrimp_Virus_1__1608095__D240-325
D2 high residues 854-941
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009666331__Mukawa_virus__1569922__D875-994
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19019.7 best Phlebo_G2_C 30.4 4.10e-07 100.0% 48.5%
D3 medium residues 79-143
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4opcA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 39.0 2.38e-01 76.9% 69.2%
3hhmA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 38.0 3.02e-01 75.4% 68.8%
5ip4E00 3.10.20.230 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain 0.53 37.0 3.47e-01 75.4% 84.5%
2uwiA01 2.10.50.10 Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 0.52 35.0 3.33e-01 72.3% 91.6%
3u3pA01 2.10.50.10 Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 0.51 36.0 3.40e-01 75.4% 88.0%
2ezvA02 2.40.50.610 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Type II restriction enzyme SfiI, DNA-recognition domain 0.51 33.0 3.24e-01 92.3% 60.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4875732 1187.1.1.1 ↗ beta complex topology › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus_G1 0.73 63.0 4.04e-01 100.0% 20.1%
2324038 1187.1.1.1 ↗ beta complex topology › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus_G1 0.72 61.0 3.96e-01 100.0% 20.3%
3796448 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.65 43.0 5.04e-01 73.8% 100.0%
3796450 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.63 41.0 4.64e-01 70.8% 95.6%
3627832 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.63 53.0 4.81e-01 100.0% 74.7%
3405828 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.63 40.0 4.34e-01 72.3% 78.2%
3574666 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.62 44.0 4.82e-01 75.4% 98.0%
3405821 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.62 41.0 4.38e-01 73.8% 81.8%
None — 0.61 46.0 3.00e-01 83.1% 85.2%
3553012 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.61 46.0 2.97e-01 83.1% 78.8%
4175822 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.60 40.0 4.51e-01 72.3% 97.8%
3625487 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.59 39.0 4.26e-01 70.8% 88.0%
3407234 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 42.0 2.88e-01 78.5% 86.0%
3501578 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.58 41.0 4.39e-01 75.4% 96.3%
3231891 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.58 39.0 4.41e-01 70.8% 97.9%
3405865 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.57 41.0 4.25e-01 76.9% 86.7%
1411379 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.57 40.0 3.92e-01 72.3% 69.6%
3235860 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.57 39.0 4.06e-01 72.3% 85.0%
3362800 375.1.1.193 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_FGT1_1 0.55 30.0 3.34e-01 75.4% 68.9%
2391089 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.55 39.0 3.73e-01 76.9% 81.0%
3946272 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 39.0 3.01e-01 81.5% 75.2%
4465307 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 27.0 3.01e-01 73.8% 58.0%
D4 medium residues 207-259
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551638__Kaisodi_virus__1564120__D210-258
D5 medium residues 547-583_681-721_809-853
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009505328__Badu_phasivirus__1980609__D739-805_894-940_1051-1072
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.89 80.0 7.11e-01 94.3% 78.9%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.71 64.0 6.34e-01 95.9% 95.2%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 30.0 4.20e-01 79.7% 100.0%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 49.0 4.40e-01 91.1% 86.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 30.0 3.89e-01 87.0% 90.8%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.55 42.0 3.95e-01 81.3% 88.7%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.54 47.0 3.89e-01 92.7% 94.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 31.0 3.85e-01 87.0% 92.0%
2f2hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 33.0 3.48e-01 88.6% 67.9%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 41.0 3.62e-01 82.9% 75.3%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.92e-01 89.4% 74.8%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 26.0 3.16e-01 79.7% 74.4%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.51 35.0 4.01e-01 88.6% 96.6%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.82e-01 88.6% 74.6%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.51 39.0 3.48e-01 82.1% 92.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1839942 5090.1.1.5 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2 0.87 79.0 5.54e-01 94.3% 89.3%
3056811 5090.1.1.2 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Hanta_Gc_N 0.75 64.0 4.68e-01 91.9% 89.3%
5014673 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 47.0 5.57e-01 94.3% 96.2%
2531649 5090.1.1.5 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2 0.71 63.0 4.56e-01 96.7% 91.6%
5028250 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.70 53.0 5.71e-01 91.1% 91.4%
3375447 274.1.1.46 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › CcmF_C 0.65 50.0 5.35e-01 89.4% 93.3%
3314422 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 33.0 4.13e-01 91.1% 94.3%
3304346 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 33.0 4.12e-01 91.1% 94.3%
3587082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 25.0 3.46e-01 83.7% 88.9%
4668044 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 41.0 4.05e-01 87.0% 73.7%
4827722 9.13.1.5 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › AOC_like 0.54 37.0 4.19e-01 82.9% 96.6%
862806 4200.1.1.2 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › DUF3108_like 0.53 45.0 3.78e-01 92.7% 93.9%
3742215 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.53 30.0 3.38e-01 86.2% 73.3%
4599318 2.1.1.299 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S12 0.52 27.0 3.22e-01 77.2% 73.8%
3894563 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.52 39.0 3.87e-01 87.0% 75.8%
3263633 2008.1.1.27 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.51 37.0 2.68e-01 76.4% 80.9%
4934762 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 36.0 3.78e-01 74.0% 100.0%
3214686 388.1.1.0 ↗ few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like 0.50 18.0 2.77e-01 86.2% 85.0%
3925021 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 40.0 3.89e-01 89.4% 76.3%
D6 medium residues 614-637_668-680_722-808
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009305144__Yichang_Insect_virus__1608144__D660-672_720-821
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07245.17 best Phlebovirus_G2 45.3 8.20e-12 99.2% 26.3%