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glycoprotein_precursor
Euk-VirLa_Gloria_virus
glycoprotein_precursor__YP_010086192__La_Gloria_virus__2559110
Identity
- Accession:
- YP_010086192 ↗
- Protein ID:
- glycoprotein_precursor
- Kingdom:
- euk
Quality
72.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Phenuiviridae›
Phlebovirus›
La_Gloria_virus
TaxID: 2559110
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-140
Domain cluster:
rep: polyprotein__YP_009346022__Tapara_virus__1926501__D16-129
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07246.16 best | Phlebovirus_NSM | 63.5 | 3.00e-17 | 99.1% | 41.3% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l2pA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.70 | 42.0 | 5.15e-01 | 76.3% | 95.8% |
| 3khpD01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 33.0 | 3.10e-01 | 84.2% | 44.9% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 41.0 | 4.64e-01 | 70.2% | 100.0% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 32.0 | 3.47e-01 | 86.0% | 62.8% |
| 5mz2I00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.57 | 44.0 | 4.20e-01 | 83.3% | 74.8% |
| 3wkmB01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.57 | 34.0 | 3.73e-01 | 88.6% | 71.3% |
| 1tj6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 34.0 | 3.43e-01 | 83.3% | 60.0% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 32.0 | 3.59e-01 | 80.7% | 74.4% |
| 1cwvA04 | 2.60.40.1080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 39.0 | 4.30e-01 | 78.1% | 98.9% |
| 5w3xD01 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.53 | 30.0 | 3.71e-01 | 81.6% | 95.4% |
| 1ztpA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.53 | 38.0 | 3.17e-01 | 75.4% | 68.4% |
| 2xetB00 | 2.60.40.2070 | Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain | 0.52 | 35.0 | 3.88e-01 | 71.1% | 89.8% |
| 2ekjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.90e-01 | 76.3% | 84.8% |
| 5llyA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 37.0 | 3.21e-01 | 77.2% | 99.5% |
| 3edpA02 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.50 | 39.0 | 3.61e-01 | 81.6% | 85.6% |
| 2hdeA01 | 3.10.20.550 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit | 0.50 | 35.0 | 3.45e-01 | 71.9% | 92.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3922889 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.68 | 48.0 | 4.79e-01 | 85.1% | 72.2% |
| 3923249 | 11.1.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 | 0.62 | 48.0 | 4.28e-01 | 81.6% | 89.3% |
| 4015706 | 221.7.1.0 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 | 0.57 | 43.0 | 4.56e-01 | 86.0% | 95.8% |
| 3493963 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.56 | 30.0 | 3.24e-01 | 84.2% | 58.0% |
| 3560375 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 44.0 | 3.89e-01 | 88.6% | 62.9% |
| 2319482 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.54 | 39.0 | 3.06e-01 | 75.4% | 69.5% |
| 5465 | 317.1.1.3 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Bles03 | 0.54 | 38.0 | 3.10e-01 | 73.7% | 63.6% |
| 3868729 | 4004.1.1.4 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › CERK_C | 0.53 | 42.0 | 3.41e-01 | 87.7% | 93.6% |
| 3614763 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 29.0 | 2.89e-01 | 86.0% | 49.2% |
| 3397854 | 11.1.3.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like | 0.52 | 40.0 | 3.92e-01 | 84.2% | 97.7% |
| 1887244 | 11.1.1.45 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 | 0.52 | 39.0 | 3.61e-01 | 78.9% | 78.9% |
| 3994568 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.85e-01 | 79.8% | 81.7% |
| 3181532 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.50 | 41.0 | 2.87e-01 | 92.1% | 91.4% |
D2
high
residues 659-740
Domain cluster:
rep: glycoprotein_precursor__YP_009304994__Wenzhou_Shrimp_Virus_1__1608095__D240-325
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07243.17 best | Phlebovirus_G1 | 102.6 | 2.70e-29 | 100.0% | 15.4% |
D3
medium
residues 323-478
Domain cluster:
rep: Glycoproteins_G1_and_G2_precursor__YP_089671__Sandfly_fever_Naples_virus__206160__D318-463
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07243.17 best | Phlebovirus_G1 | 112.9 | 2.00e-32 | 95.5% | 25.5% |
D4
medium
residues 890-942_1034-1076_1189-1199
D5
medium
residues 943-1018
Domain cluster:
rep: M_protein__YP_009512940__Punta_Toro_virus__11587__D880-962_1071-1085
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07245.17 best | Phlebovirus_G2 | 56.3 | 3.60e-15 | 98.7% | 21.4% |