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glycoprotein_precursor
Euk-VirGroundnut_chlorotic_fan-spot_virus
glycoprotein_precursor__YP_010086235__Groundnut_chlorotic_fan-spot_virus__1629551
Identity
- Accession:
- YP_010086235 ↗
- Protein ID:
- glycoprotein_precursor
- Kingdom:
- euk
Quality
56.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Tospoviridae›
Orthotospovirus›
Groundnut_chlorotic_fan-spot_virus
TaxID: 1629551
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 100-156_169-241
D2
medium
residues 441-542
D3
medium
residues 642-656_721-819_858-883
Domain cluster:
rep: glycoprotein__YP_010085106__Culex_phasma-like_virus__2010276__D222-237_310-353_369-468
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.52 | 23.0 | 3.07e-01 | 85.7% | 79.1% |
| 2hv2A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 22.0 | 2.57e-01 | 92.1% | 55.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3056811 | 5090.1.1.2 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Hanta_Gc_N | 0.79 | 73.0 | 5.52e-01 | 100.0% | 76.3% |
| 406733 | 5090.1.1.3 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Alpha_E1_glycop | 0.78 | 73.0 | 5.58e-01 | 100.0% | 81.6% |
| 4840163 | 11.1.1.28 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E1_glycop | 0.77 | 72.0 | 5.53e-01 | 100.0% | 81.9% |
| 3993949 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.54 | 19.0 | 3.00e-01 | 97.9% | 84.4% |
| 3606816 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 25.0 | 2.78e-01 | 100.0% | 55.5% |
D4
medium
residues 657-720_820-857
Domain cluster:
rep: glycoprotein_precursor__YP_009551599__Avalon_virus__1810950__D843-903_1047-1069
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03557.22 best | Bunya_G1 | 32.1 | 5.50e-08 | 74.5% | 6.2% |
D5
medium
residues 884-942
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pfoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 42.0 | 3.32e-01 | 74.6% | 53.9% |
| 3pfeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 41.0 | 3.27e-01 | 72.9% | 53.8% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 43.0 | 3.43e-01 | 74.6% | 50.9% |
| 1ar0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 3.15e-01 | 74.6% | 41.6% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 3.15e-01 | 81.4% | 40.5% |
| 7t4dA01 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.54 | 37.0 | 2.44e-01 | 72.9% | 69.9% |
| 2fdoA00 | 3.30.1970.10 | Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like | 0.51 | 37.0 | 3.29e-01 | 79.7% | 72.0% |
| 4tw1B00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.51 | 35.0 | 2.39e-01 | 76.3% | 72.0% |
| 1pu1A00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.51 | 34.0 | 3.08e-01 | 71.2% | 64.8% |
| 2gxfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 35.0 | 2.88e-01 | 74.6% | 40.7% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.50 | 37.0 | 2.96e-01 | 83.1% | 86.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014271 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.66 | 47.0 | 3.68e-01 | 74.6% | 50.8% |
| 3517644 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.59 | 41.0 | 3.17e-01 | 72.9% | 83.0% |
| 4967170 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.59 | 41.0 | 3.61e-01 | 72.9% | 62.9% |
| 4983082 | 11.1.1.531 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF11 | 0.59 | 40.0 | 3.41e-01 | 71.2% | 68.0% |
| 5075193 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.59 | 40.0 | 3.18e-01 | 72.9% | 56.2% |
| 3698605 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.58 | 42.0 | 3.62e-01 | 79.7% | 83.0% |
| 3716385 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 39.0 | 3.10e-01 | 74.6% | 40.7% |
| 5010090 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.56 | 38.0 | 2.79e-01 | 71.2% | 60.0% |
| 3743138 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.56 | 39.0 | 3.15e-01 | 72.9% | 40.9% |
| 4383723 | 5087.3.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C | 0.56 | 38.0 | 2.49e-01 | 74.6% | 28.9% |
| 4673372 | 922.1.1.10 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › PMSI1 | 0.53 | 37.0 | 3.79e-01 | 72.9% | 89.1% |
| 3731333 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.53 | 37.0 | 2.94e-01 | 76.3% | 87.1% |
| 3602774 | 304.51.1.8 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C | 0.53 | 36.0 | 2.97e-01 | 71.2% | 40.9% |
D6
medium
residues 943-1001
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n40P02 | 2.60.40.3200 | Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain | 0.54 | 45.0 | 3.12e-01 | 96.6% | 72.8% |
| 3k50A01 | 3.30.750.170 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.51 | 35.0 | 2.98e-01 | 72.9% | 93.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3996793 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 4.11e-01 | 88.1% | 81.7% |
| 3515963 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 37.0 | 3.86e-01 | 86.4% | 80.0% |