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glycoprotein_precursor

Euk-Vir

Clo_Mor_virus

glycoprotein_precursor__YP_010229110__Clo_Mor_virus__1810952

Identity

Accession:
YP_010229110 ↗
Protein ID:
glycoprotein_precursor
Kingdom:
euk

Quality

63.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Nairoviridae› Orthonairovirus› Clo_Mor_virus

TaxID: 1810952

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 242-388_411-467
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551658__Great_Saltee_virus__1810946__D191-359_380-396
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07948.16 best Nairovirus_GP38 25.8 1.00e-05 70.1% 49.0%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wfpA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 28.0 3.90e-01 85.3% 99.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4980983 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 27.0 3.25e-01 95.1% 68.8%
5082810 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 25.0 3.08e-01 95.1% 73.6%
D2 high residues 479-552
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551599__Avalon_virus__1810950__D436-501
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20726.3 best Nairovirus_Gn 47.3 2.10e-12 100.0% 22.7%
D3 medium residues 553-722
PDB
Domain cluster: rep: glycoprotein_precursor,_partial__YP_009666121__Artashat_orthonairovirus__2170061__D548-698
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20726.3 best Nairovirus_Gn 72.4 4.70e-20 100.0% 51.2%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cwzB01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.70 30.0 3.22e-01 77.6% 45.9%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.66 29.0 3.46e-01 75.9% 59.5%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 32.0 3.20e-01 75.3% 48.0%
1oahA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 30.0 3.27e-01 75.9% 55.6%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.60 25.0 3.09e-01 76.5% 57.3%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 28.0 3.52e-01 72.9% 72.6%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.59 33.0 3.69e-01 80.6% 67.7%
7r0kB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 26.0 2.31e-01 82.4% 29.0%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 30.0 3.82e-01 77.6% 88.3%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 28.0 3.14e-01 87.1% 61.7%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 33.0 3.30e-01 78.8% 60.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3735108 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.60 33.0 3.43e-01 83.5% 56.8%
4027809 3871.1.1.0 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST 0.58 34.0 3.64e-01 89.4% 66.2%
3669818 3922.1.1.284 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF29520 0.57 35.0 3.44e-01 87.1% 54.2%
3726471 5038.2.1.1 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.57 34.0 3.81e-01 81.8% 74.1%
4003906 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.55 30.0 3.39e-01 94.7% 66.2%
3610581 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.54 29.0 3.25e-01 84.1% 62.2%
3921116 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 32.0 2.89e-01 88.2% 42.2%
3956193 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.51 36.0 4.09e-01 70.6% 97.6%
3884038 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 37.0 3.37e-01 74.7% 83.9%
3784126 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.51 32.0 3.37e-01 92.4% 67.5%
5083949 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.50 33.0 3.64e-01 90.0% 83.8%
D4 medium residues 824-875_961-1004_1146-1173
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009362035__Kibale_virus__1406344__D349-405_490-561_609-646
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01561.22 best Hanta_Gc_N 28.9 9.00e-07 51.6% 13.3%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.80 64.0 6.40e-01 83.9% 94.4%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.77 71.0 6.41e-01 99.2% 91.6%
1svbA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.64 57.0 5.59e-01 97.6% 90.4%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 28.0 3.70e-01 73.4% 91.2%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.58 43.0 3.50e-01 77.4% 55.6%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 43.0 3.97e-01 79.8% 70.1%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.55 27.0 3.40e-01 73.4% 81.5%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 41.0 3.99e-01 95.2% 69.8%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.58e-01 81.5% 67.3%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.54 48.0 4.65e-01 96.0% 100.0%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 4.05e-01 82.3% 73.2%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 30.0 3.37e-01 77.4% 69.8%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.53 31.0 3.60e-01 87.1% 79.1%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 38.0 3.67e-01 96.0% 65.3%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 4.32e-01 93.5% 91.9%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 40.0 3.83e-01 81.5% 72.9%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.52 37.0 2.80e-01 74.2% 34.6%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.46e-01 99.2% 80.4%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.81e-01 91.1% 69.3%
3hqiA01 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.50 43.0 4.22e-01 94.4% 97.8%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 32.0 2.55e-01 80.6% 29.5%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 29.0 3.59e-01 85.5% 95.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.78 49.0 5.94e-01 86.3% 98.8%
5012193 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 51.0 4.22e-01 91.1% 40.5%
3375447 274.1.1.46 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › CcmF_C 0.67 53.0 5.78e-01 94.4% 99.0%
3514856 1181.1.1.0 ↗ 0.61 35.0 4.44e-01 97.6% 96.0%
3297678 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 4.55e-01 96.8% 81.7%
3303238 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.60 44.0 4.52e-01 96.8% 80.0%
5058112 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.58 44.0 4.15e-01 96.8% 66.9%
3789933 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 45.0 4.88e-01 87.9% 100.0%
3181778 3385.1.1.1 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › AltA1 0.54 43.0 4.12e-01 86.3% 100.0%
3794791 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.54 49.0 4.43e-01 98.4% 91.5%
3717061 304.107.1.5 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N 0.53 36.0 3.80e-01 87.9% 75.7%
3690464 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 40.0 3.49e-01 79.8% 77.9%
3235703 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 39.0 3.64e-01 75.8% 69.3%
3228695 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 45.0 4.23e-01 93.5% 96.1%
3459912 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 47.0 4.51e-01 96.0% 97.9%
1413889 274.1.1.5 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.52 34.0 3.86e-01 70.2% 90.1%
3225193 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 46.0 4.40e-01 93.5% 90.0%
3628180 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 46.0 4.27e-01 96.0% 93.5%
3834272 5.1.5.96 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.50 36.0 2.73e-01 79.0% 30.8%
4958749 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.50 37.0 3.25e-01 77.4% 90.5%
4130767 274.1.1.5 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.50 32.0 3.65e-01 71.0% 91.8%
5044101 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.50 37.0 3.31e-01 77.4% 91.1%
D5 medium residues 876-888_950-960_1005-1088_1111-1145
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551599__Avalon_virus__1810950__D904-915_963-1046_1070-1083
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01561.22 best Hanta_Gc_N 46.0 5.50e-12 93.7% 33.4%
D6 medium residues 889-949_1089-1110
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551599__Avalon_virus__1810950__D843-903_1047-1069
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01561.22 best Hanta_Gc_N 64.0 1.90e-17 80.7% 16.9%
D7 medium residues 1174-1285
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009664619__Gouleako_virus__603003__D815-896
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20682.4 best Hanta_Gc_C 45.0 1.50e-11 100.0% 47.6%