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glycoprotein_precursor

Euk-Vir

Melon_yellow_spot_virus

glycoprotein_precursor__YP_717935__Melon_yellow_spot_virus__89471

Identity

Accession:
YP_717935 ↗
Protein ID:
glycoprotein_precursor
Kingdom:
euk

Quality

64.3 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Tospoviridae› Orthotospovirus› Melon_yellow_spot_virus

TaxID: 89471

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 106-200
PDB
D2 medium residues 201-270
PDB
D3 medium residues 451-526
PDB
Domain cluster: rep: G_precursor__YP_009449456__Calla_lily_chlorotic_spot_virus__309542__D447-528
D4 medium residues 527-539_552-598
PDB
D5 medium residues 599-639_758-787_887-902
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qa1A02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 35.0 3.69e-01 85.1% 59.5%
2e8yA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 3.47e-01 89.7% 54.7%
4j3vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.24e-01 89.7% 50.5%
2wanA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.28e-01 89.7% 52.9%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 38.0 3.45e-01 74.7% 59.2%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.54 39.0 4.05e-01 75.9% 82.5%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.53 39.0 3.50e-01 80.5% 60.9%
2j3tC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 39.0 3.33e-01 78.2% 100.0%
3ig5A02 3.30.590.50 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.52 37.0 2.56e-01 78.2% 81.8%
3c30A02 2.20.20.100 Mainly Beta › Single Sheet › Anthopleurin-A › LuxQ periplasmic domain, C-terminal subdomain 0.51 36.0 4.02e-01 77.0% 100.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050618 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 47.0 4.01e-01 80.5% 65.0%
5051461 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 47.0 3.82e-01 83.9% 50.0%
3724208 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 43.0 3.66e-01 85.1% 44.7%
3998555 327.11.2.6 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_10 0.57 40.0 4.11e-01 85.1% 80.0%
3483890 223.2.1.25 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.57 45.0 3.69e-01 86.2% 68.8%
3695070 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 49.0 4.00e-01 100.0% 82.1%
3559931 3850.1.1.1 ↗ few secondary structure elements › Protein-only RNase P Zn-binding domain › Protein-only RNase P Zn-binding domain › Protein-only RNase P Zn-binding domain › PRORP 0.56 42.0 4.59e-01 81.6% 100.0%
3495780 304.107.1.5 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N 0.56 28.0 2.30e-01 89.7% 25.2%
3717061 304.107.1.5 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N 0.56 45.0 4.10e-01 87.4% 74.8%
5050533 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 3.44e-01 77.0% 58.6%
5028249 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.54 47.0 4.29e-01 95.4% 100.0%
3059233 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 43.0 3.53e-01 85.1% 73.1%
3536437 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.58e-01 83.9% 62.8%
3236112 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.53 42.0 3.68e-01 86.2% 74.8%
4208434 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.53 45.0 3.23e-01 100.0% 66.4%
5009785 321.1.1.0 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.52 46.0 3.71e-01 100.0% 91.4%
3521712 109.6.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF 0.52 38.0 2.54e-01 94.3% 18.9%
3224618 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.65e-01 82.8% 88.7%
3519584 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.52 43.0 4.02e-01 100.0% 73.6%
3225950 304.126.1.1 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.51 37.0 3.30e-01 82.8% 54.2%
D6 medium residues 640-667_730-757_788-828_860-886
PDB
Domain cluster: rep: glycoprotein__YP_010085106__Culex_phasma-like_virus__2010276__D222-237_310-353_369-468
D7 medium residues 668-729_829-859
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551599__Avalon_virus__1810950__D843-903_1047-1069
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 40.7 1.40e-10 64.5% 5.7%
D8 medium residues 913-1008
PDB
Domain cluster: rep: glycoprotein_precursor__YP_010086063__Alstroemeria_necrotic_streak_virus__693450__D943-1015
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 30.4 1.80e-07 86.5% 7.3%