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glycoprotein_precursor_complex

Euk-Vir

Dashli_virus

glycoprotein_precursor_complex__YP_010086169__Dashli_virus__1764087

Identity

Accession:
YP_010086169 ↗
Protein ID:
glycoprotein_precursor_complex
Kingdom:
euk

Quality

74.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Phlebovirus› Dashli_virus

TaxID: 1764087

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-133
PDB
Domain cluster: rep: polyprotein__YP_009346022__Tapara_virus__1926501__D16-129
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07246.16 best Phlebovirus_NSM 147.4 7.60e-43 100.0% 43.2%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i1sA00 3.10.290.30 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › MM3350-like 0.57 49.0 4.35e-01 100.0% 97.2%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 4.22e-01 77.2% 100.0%
2q5wD00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.54 35.0 4.04e-01 71.9% 97.4%
1auwA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.54 38.0 3.13e-01 74.6% 76.8%
1yfmA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.52 38.0 3.02e-01 78.1% 84.8%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 36.0 3.92e-01 71.9% 93.3%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 36.0 3.88e-01 71.9% 96.9%
3nr5A00 3.40.1000.50 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Repressor of RNA polymerase III transcription Maf1 0.52 40.0 3.61e-01 82.5% 86.0%
2q7aA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.86e-01 90.4% 90.8%
4jf6A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 41.0 3.37e-01 91.2% 95.4%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 42.0 3.19e-01 93.0% 97.7%
1mwsA04 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 42.0 3.15e-01 95.6% 97.3%
2hdeA01 3.10.20.550 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit 0.50 35.0 3.44e-01 71.9% 91.1%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 41.0 3.04e-01 90.4% 98.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927244 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.58 34.0 3.99e-01 88.6% 85.3%
3390961 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 4.17e-01 85.1% 100.0%
3497076 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 39.0 4.27e-01 73.7% 98.9%
3510321 210.1.4.1 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.55 46.0 3.43e-01 95.6% 100.0%
4502514 221.6.1.1 ↗ a+b two layers › beta-Grasp › MM3350-like › MM3350-like › PRiA4_ORF3 0.55 47.0 4.11e-01 100.0% 92.1%
3926652 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 37.0 3.97e-01 76.3% 86.3%
3579527 221.1.1.25 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › APG12 0.53 37.0 3.84e-01 72.8% 81.0%
3968364 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.53 36.0 3.26e-01 70.2% 74.2%
3931704 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.53 36.0 3.70e-01 84.2% 72.7%
3928360 221.1.1.25 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › APG12 0.52 37.0 3.86e-01 73.7% 86.0%
3256537 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.52 37.0 2.91e-01 73.7% 62.5%
4107230 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.50 40.0 2.97e-01 88.6% 94.3%
4514593 223.1.1.7 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.50 38.0 3.30e-01 79.8% 94.6%
3741078 221.1.1.44 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.50 32.0 3.69e-01 71.1% 97.3%
3909868 221.1.1.89 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Il2rg 0.50 36.0 3.60e-01 76.3% 75.8%
D2 high residues 623-713
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009304994__Wenzhou_Shrimp_Virus_1__1608095__D240-325
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07243.17 best Phlebovirus_G1 155.3 2.90e-45 100.0% 17.1%
D3 high residues 904-991_1066-1110_1275-1291
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009362036__Kigluaik_phantom_orthophasmavirus__1980539__D304-407_471-524
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07245.17 best Phlebovirus_G2 58.3 8.90e-16 59.3% 25.7%
D4 medium residues 149-203_217-235
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07246.16 best Phlebovirus_NSM 53.9 2.50e-14 100.0% 28.4%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.88 66.0 7.07e-01 78.4% 89.1%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.85 65.0 6.15e-01 81.1% 89.8%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.85 69.0 6.49e-01 87.8% 73.3%
1kvkA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.85 58.0 4.53e-01 81.1% 35.8%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.84 73.0 6.36e-01 91.9% 71.7%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 77.0 6.08e-01 100.0% 79.1%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.82 65.0 6.31e-01 82.4% 77.8%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.82 77.0 6.54e-01 100.0% 71.1%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.82 65.0 6.62e-01 86.5% 86.1%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.82 68.0 6.74e-01 91.9% 84.4%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.82 60.0 6.40e-01 77.0% 87.5%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 62.0 6.10e-01 90.5% 76.6%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.81 74.0 6.49e-01 100.0% 69.9%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.80 61.0 6.61e-01 83.8% 93.7%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 58.0 6.17e-01 83.8% 87.5%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.80 59.0 6.10e-01 78.4% 94.4%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 73.0 5.50e-01 100.0% 45.8%
2qe7G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.79 51.0 4.63e-01 71.6% 49.5%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 65.0 5.77e-01 87.8% 63.7%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.78 71.0 6.23e-01 100.0% 68.2%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.78 64.0 5.50e-01 86.5% 59.1%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.78 63.0 5.99e-01 86.5% 74.4%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.78 61.0 5.49e-01 83.8% 76.8%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 65.0 6.37e-01 91.9% 84.8%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.77 57.0 4.52e-01 82.4% 40.6%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.77 68.0 5.45e-01 100.0% 50.7%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.76 59.0 4.75e-01 82.4% 44.9%
3zdqA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.75 60.0 3.84e-01 85.1% 64.0%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.74 64.0 6.09e-01 94.6% 89.4%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.74 64.0 5.71e-01 95.9% 67.6%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.74 55.0 5.13e-01 91.9% 64.4%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 53.0 4.56e-01 77.0% 49.6%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.73 66.0 5.81e-01 95.9% 70.6%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 56.0 5.49e-01 83.8% 76.5%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 59.0 5.20e-01 94.6% 62.6%
1rfyB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.71 57.0 5.36e-01 86.5% 71.6%
2v0pA00 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.71 54.0 3.82e-01 81.1% 29.4%
1op1A00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.70 47.0 4.56e-01 77.0% 62.2%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 4.46e-01 78.4% 71.3%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.66 55.0 5.55e-01 91.9% 90.5%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 57.0 5.11e-01 100.0% 79.2%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 49.0 5.07e-01 81.1% 91.2%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 52.0 5.30e-01 90.5% 90.5%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 50.0 4.99e-01 87.8% 83.3%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 44.0 4.35e-01 85.1% 69.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3919840 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.88 82.0 5.67e-01 100.0% 40.0%
3462288 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.87 72.0 6.65e-01 86.5% 83.3%
4315986 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.86 65.0 6.03e-01 90.5% 64.4%
3944240 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.85 63.0 5.86e-01 90.5% 63.3%
3600080 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.84 69.0 4.31e-01 87.8% 19.7%
4604091 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.84 79.0 7.00e-01 100.0% 78.0%
3276646 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.83 74.0 5.81e-01 100.0% 50.0%
3409871 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.81 75.0 4.42e-01 100.0% 16.4%
5079947 4323.1.1.0 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.80 71.0 5.65e-01 95.9% 51.1%
3595968 605.2.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.80 64.0 6.25e-01 83.8% 77.5%
4406905 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 62.0 6.36e-01 86.5% 88.6%
3167271 192.8.1.385 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med11 0.72 54.0 5.33e-01 81.1% 75.0%
3543713 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.37e-01 98.6% 81.1%
D5 medium residues 306-465_507-542
PDB
Domain cluster: rep: Glycoproteins_G1_and_G2_precursor__YP_089671__Sandfly_fever_Naples_virus__206160__D318-463
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07243.17 best Phlebovirus_G1 186.5 1.00e-54 82.7% 29.7%
D6 medium residues 466-506_543-619
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07243.17 best Phlebovirus_G1 118.7 3.40e-34 66.1% 14.4%
PF07243.17 Phlebovirus_G1 48.1 8.50e-13 35.6% 7.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2324038 1187.1.1.1 ↗ beta complex topology › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus_G1 0.92 85.0 5.98e-01 96.6% 48.7%
D7 medium residues 857-902_992-1065_1111-1165
PDB
Domain cluster: rep: polyprotein__YP_010086088__Turuna_virus__629737__D837-881_976-1141
D8 medium residues 1166-1274
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009666331__Mukawa_virus__1569922__D875-994
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19019.7 best Phlebo_G2_C 159.3 1.00e-46 94.5% 59.1%