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glycoprotein_precursor_complex

Euk-Vir

Medjerda_Valley_virus

glycoprotein_precursor_complex__YP_010086173__Medjerda_Valley_virus__1775957

Identity

Accession:: YP_010086173 ↗
Protein ID:: glycoprotein_precursor_complex
Kingdom:: euk

Quality

72.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Phlebovirus› Medjerda_Valley_virus

TaxID: 1775957

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-129

PDB

Domain cluster: rep: polyprotein__YP_009346022__Tapara_virus__1926501__D16-129

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07246.16 best	Phlebovirus_NSM	34.9	1.60e-08	99.1%	40.9%

D2 high residues 615-717

PDB

Domain cluster: rep: glycoprotein_precursor__YP_009304994__Wenzhou_Shrimp_Virus_1__1608095__D240-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07243.17 best	Phlebovirus_G1	146.6	1.30e-42	100.0%	19.4%

D3 medium residues 295-449

PDB

Domain cluster: rep: Glycoproteins_G1_and_G2_precursor__YP_089671__Sandfly_fever_Naples_virus__206160__D318-463

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07243.17 best	Phlebovirus_G1	149.6	1.50e-43	99.4%	28.1%

D4 medium residues 903-982_1002-1015_1081-1104

PDB

Domain cluster: rep: M_protein__YP_009512940__Punta_Toro_virus__11587__D880-962_1071-1085

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07245.17 best	Phlebovirus_G2	54.7	1.20e-14	73.7%	23.2%

D5 medium residues 983-1001_1016-1080_1105-1149

PDB

Domain cluster: rep: glycoprotein_precursor__YP_009305144__Yichang_Insect_virus__1608144__D660-672_720-821

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zfnA02	2.30.140.40	Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain	0.56	23.0	3.38e-01	93.8%	86.0%
3da7E00	3.40.20.20	Alpha Beta › 3-Layer(aba) Sandwich › Severin ›	0.55	28.0	3.09e-01	92.2%	58.3%
7u32F02	2.30.30.10	Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral	0.51	19.0	2.89e-01	87.6%	80.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1839942	5090.1.1.5 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2	0.85	81.0	5.79e-01	100.0%	49.7%
3347499	5.1.10.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed	0.57	24.0	3.08e-01	90.7%	65.7%

D6 medium residues 1150-1282

PDB

Domain cluster: rep: glycoprotein_precursor__YP_009666331__Mukawa_virus__1569922__D875-994

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19019.7 best	Phlebo_G2_C	161.6	2.10e-47	88.7%	69.0%