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gp139

Euk-Vir

Caviid_betaherpesvirus_2

gp139__YP_007417889__Caviid_betaherpesvirus_2__33706

Identity

Accession:: YP_007417889 ↗
Protein ID:: gp139
Kingdom:: euk

Quality

56.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Quwivirus› Caviid_betaherpesvirus_2

TaxID: 33706

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 65-215

PDB

Domain cluster: rep: protein_U95__YP_073826__Human_betaherpesvirus_7__10372__D619-769

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02393.22 best	US22	69.8	3.20e-19	78.1%	99.2%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1z1bA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.63	23.0	3.78e-01	73.5%	89.5%
1olzA01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.55	40.0	2.84e-01	76.2%	49.3%
3ffvA00	3.40.1580.20	Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Syd protein	0.54	42.0	4.02e-01	82.1%	93.9%
6eotD01	2.140.10.30	Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain	0.54	41.0	2.79e-01	78.1%	39.4%
4ld1A00	2.60.450.20	Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold ›	0.53	25.0	2.51e-01	72.2%	40.8%
1pguA02	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.53	41.0	3.19e-01	80.8%	98.1%
8f5pE01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.53	38.0	2.86e-01	75.5%	42.6%
1g5hB02	3.40.50.800	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain	0.51	33.0	3.81e-01	80.8%	90.7%
1xipA00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.50	44.0	3.34e-01	95.4%	73.0%
7cfdA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.50	24.0	3.17e-01	86.1%	86.3%
1a2pA00	3.10.450.30	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases	0.50	33.0	3.86e-01	72.8%	94.4%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3594793	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.53	38.0	2.96e-01	73.5%	51.7%
3442241	5.1.3.118 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3	0.52	40.0	3.10e-01	78.8%	97.5%
3211395	5.1.4.102 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3	0.52	37.0	2.93e-01	72.8%	53.1%
3549654	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	42.0	2.46e-01	84.8%	22.1%
3335846	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.52	43.0	3.39e-01	90.1%	97.0%
3421682	5.1.3.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed	0.52	41.0	3.13e-01	82.8%	85.1%
5078315	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.51	45.0	3.05e-01	98.7%	62.3%
3275416	5.1.4.90 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2	0.51	42.0	3.23e-01	90.1%	96.1%
3275111	5.1.4.304 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd	0.50	43.0	3.29e-01	91.4%	89.1%

D2 high residues 226-364

PDB

Domain cluster: rep: protein_U95__YP_073826__Human_betaherpesvirus_7__10372__D619-769

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02393.22 best	US22	36.7	5.50e-09	93.5%	58.9%