←Back to structures
gp41
Euk-VirClostera_anastomosis_granulovirus_B
gp41__YP_009506030__Clostera_anastomosis_granulovirus_B__1986290
Identity
- Accession:
- YP_009506030 ↗
- Protein ID:
- gp41
- Kingdom:
- euk
Quality
65.9
mean pLDDT
Taxonomy
TaxID: 1986290
Cluster
View cluster (31 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 157-237
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04700.18 best | Baculo_gp41 | 93.9 | 1.60e-26 | 88.9% | 37.6% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 39.0 | 3.78e-01 | 77.8% | 57.1% |
| 3d3oA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.57 | 40.0 | 3.10e-01 | 71.6% | 67.6% |
| 2p0tA02 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.57 | 37.0 | 3.90e-01 | 88.9% | 75.0% |
| 2oblA02 | 1.20.1270.330 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 29.0 | 3.09e-01 | 97.5% | 48.6% |
| 3q9oA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.53 | 38.0 | 3.12e-01 | 77.8% | 66.5% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.53 | 36.0 | 3.12e-01 | 70.4% | 58.1% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.51 | 39.0 | 3.99e-01 | 81.5% | 83.5% |
| 1ff9A03 | 1.10.1870.10 | Mainly Alpha › Orthogonal Bundle › Domain 3, Saccharopine reductase › Domain 3, Saccharopine reductase | 0.51 | 38.0 | 3.54e-01 | 79.0% | 98.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3681230 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.57 | 39.0 | 3.32e-01 | 70.4% | 100.0% |
| 3671578 | 2485.1.1.10 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DSBA | 0.54 | 40.0 | 3.12e-01 | 80.2% | 76.8% |
D2
medium
residues 6-134