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gwa1_scaffold_0_prodigal-single.1__X__X__00018
Bact-Virgwa1_scaffold_0_prodigal-single.1__X__X__00018
Identity
- Kingdom:
- phage
Quality
57.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 121-250
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.73 | 51.0 | 5.60e-01 | 70.8% | 99.1% |
| 4k5yA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.67 | 43.0 | 3.46e-01 | 73.8% | 33.9% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.65 | 37.0 | 4.83e-01 | 83.1% | 98.7% |
| 1auwA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.64 | 45.0 | 3.69e-01 | 70.8% | 45.6% |
| 3n3dB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.64 | 57.0 | 4.22e-01 | 94.6% | 55.6% |
| 8etcb01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 42.0 | 4.03e-01 | 70.0% | 67.8% |
| 1yfmA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.59 | 50.0 | 3.88e-01 | 90.0% | 79.2% |
| 4y9jA01 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 43.0 | 4.15e-01 | 76.2% | 79.9% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.58 | 42.0 | 4.08e-01 | 90.0% | 66.2% |
| 3mzvA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 52.0 | 3.97e-01 | 100.0% | 55.7% |
| 7cfmR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 39.0 | 3.10e-01 | 76.2% | 33.8% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 40.0 | 4.43e-01 | 83.1% | 88.0% |
| 2pfmA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.57 | 48.0 | 3.83e-01 | 90.8% | 77.7% |
| 1ad6A00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 49.0 | 4.42e-01 | 96.9% | 70.8% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 40.0 | 4.03e-01 | 83.1% | 70.6% |
| 6wngA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.56 | 46.0 | 3.63e-01 | 88.5% | 72.3% |
| 1jkwA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 40.0 | 3.60e-01 | 99.2% | 55.1% |
| 2x1lA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.55 | 35.0 | 3.20e-01 | 77.7% | 48.8% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 42.0 | 3.95e-01 | 86.9% | 65.6% |
| 1dofA01 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.54 | 45.0 | 3.70e-01 | 90.0% | 72.5% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.54 | 43.0 | 3.45e-01 | 83.1% | 54.2% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 43.0 | 3.81e-01 | 87.7% | 99.0% |
| 2idgA00 | 1.10.3480.10 | Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like | 0.53 | 38.0 | 3.53e-01 | 72.3% | 84.9% |
| 4fz4A00 | 1.20.140.130 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.53 | 43.0 | 4.12e-01 | 92.3% | 74.0% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 30.0 | 3.64e-01 | 87.7% | 87.8% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 36.0 | 3.93e-01 | 80.0% | 84.9% |
| 7cj3A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 42.0 | 3.42e-01 | 90.0% | 100.0% |
| 7f16R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 41.0 | 3.25e-01 | 86.2% | 52.3% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 43.0 | 3.69e-01 | 91.5% | 62.1% |
| 2pbxA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 34.0 | 2.97e-01 | 83.1% | 43.7% |
| 3owaA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 43.0 | 3.91e-01 | 90.0% | 92.4% |
| 2fsfB04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.51 | 35.0 | 3.06e-01 | 71.5% | 90.1% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3453285 | 3562.1.1.11 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › PGG | 0.72 | 45.0 | 4.46e-01 | 70.8% | 59.3% |
| 3623633 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.70 | 41.0 | 3.98e-01 | 72.3% | 51.7% |
| 3419614 | 611.9.1.0 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain | 0.69 | 48.0 | 4.74e-01 | 70.0% | 100.0% |
| 3476314 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.69 | 45.0 | 4.44e-01 | 70.0% | 62.2% |
| 3666122 | 3562.1.1.0 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 | 0.68 | 50.0 | 4.63e-01 | 76.2% | 72.5% |
| 4030787 | 605.1.1.303 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Terminase_4 | 0.66 | 49.0 | 5.46e-01 | 96.2% | 98.0% |
| 3179505 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.66 | 42.0 | 4.02e-01 | 70.0% | 54.2% |
| 3450594 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.65 | 46.0 | 5.17e-01 | 73.1% | 93.0% |
| 3811877 | 3937.1.1.0 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 | 0.65 | 42.0 | 3.90e-01 | 70.0% | 52.1% |
| 3784582 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.63 | 51.0 | 4.08e-01 | 86.2% | 81.6% |
| 3197587 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.63 | 50.0 | 3.78e-01 | 90.0% | 35.6% |
| 3440522 | 5069.1.3.12 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF6490 | 0.62 | 44.0 | 5.06e-01 | 76.9% | 98.9% |
| 2841939 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.62 | 41.0 | 3.13e-01 | 70.0% | 28.9% |
| 3581305 | 604.12.1.92 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Meckelin | 0.62 | 47.0 | 4.10e-01 | 80.8% | 54.1% |
| 3992946 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 53.0 | 4.36e-01 | 93.8% | 52.5% |
| 3263125 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.61 | 44.0 | 3.99e-01 | 76.2% | 57.2% |
| 3227233 | 4177.1.1.3 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Arfaptin | 0.60 | 47.0 | 3.81e-01 | 83.1% | 73.7% |
| 3670373 | 5054.1.1.70 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Yip1 | 0.60 | 39.0 | 4.23e-01 | 78.5% | 78.2% |
| 3998866 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.59 | 53.0 | 4.95e-01 | 97.7% | 80.6% |
| 227631 | 3282.1.1.1 ↗ | a+b complex topology › LidA › LidA › LidA › LidA_Long_CC | 0.59 | 47.0 | 3.47e-01 | 84.6% | 59.1% |
| 3252459 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.57 | 42.0 | 3.69e-01 | 76.2% | 62.1% |
| 3731180 | 2004.1.1.420 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, TIP49 | 0.57 | 40.0 | 3.07e-01 | 72.3% | 72.3% |
| 3729492 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.57 | 39.0 | 3.72e-01 | 70.8% | 60.0% |
| 3611030 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.57 | 43.0 | 3.09e-01 | 78.5% | 42.9% |
| 3938199 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 36.0 | 3.25e-01 | 85.4% | 45.7% |
| 5074368 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.56 | 41.0 | 3.32e-01 | 73.8% | 47.3% |
| 3408733 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.56 | 44.0 | 3.00e-01 | 98.5% | 22.5% |
| 3833252 | 4106.1.1.0 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack | 0.56 | 45.0 | 4.39e-01 | 86.2% | 90.3% |
| 4575614 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.55 | 49.0 | 3.96e-01 | 100.0% | 50.0% |
| 3440148 | 611.7.1.2 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › MCAfunc | 0.54 | 43.0 | 4.32e-01 | 91.5% | 81.5% |
| 4022513 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.54 | 45.0 | 4.18e-01 | 88.5% | 87.5% |
| 3482274 | 142.1.1.5 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI | 0.54 | 49.0 | 4.94e-01 | 100.0% | 99.2% |
| 3734418 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.53 | 47.0 | 3.58e-01 | 99.2% | 78.2% |
| 3575264 | 604.12.1.61 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Clc-like | 0.53 | 39.0 | 4.14e-01 | 82.3% | 87.0% |
| 4978597 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.52 | 43.0 | 3.84e-01 | 87.7% | 71.4% |
| 3490709 | 102.1.3.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain | 0.52 | 44.0 | 4.26e-01 | 93.1% | 93.1% |
| 3444302 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.52 | 45.0 | 4.46e-01 | 95.4% | 96.3% |
| 3720184 | 5073.1.2.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain | 0.51 | 44.0 | 3.85e-01 | 96.2% | 83.4% |
| 3622960 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 41.0 | 4.12e-01 | 83.8% | 87.7% |
| 4214015 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.51 | 33.0 | 3.54e-01 | 86.9% | 76.4% |