←Back to structures
gwa1_scaffold_0_prodigal-single.1__X__X__00037
Bact-Virgwa1_scaffold_0_prodigal-single.1__X__X__00037
Identity
- Kingdom:
- phage
Quality
95.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-58
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6rk7B02 | 3.30.300.10 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.72 | 49.0 | 3.66e-01 | 71.7% | 50.0% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 58.0 | 4.82e-01 | 90.6% | 52.6% |
| 3bypA00 | 3.30.70.1350 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain | 0.70 | 55.0 | 4.74e-01 | 86.8% | 54.9% |
| 3ej7H00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.69 | 57.0 | 5.72e-01 | 92.5% | 92.6% |
| 2fltA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.68 | 58.0 | 4.60e-01 | 100.0% | 87.2% |
| 6ogmD00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.68 | 56.0 | 5.39e-01 | 92.5% | 82.0% |
| 4m1aA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.68 | 50.0 | 4.05e-01 | 86.8% | 40.2% |
| 2x4kA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.67 | 56.0 | 5.32e-01 | 92.5% | 80.6% |
| 4fdxB00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.67 | 55.0 | 5.25e-01 | 92.5% | 78.1% |
| 3mb2B00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.67 | 52.0 | 5.05e-01 | 84.9% | 79.7% |
| 1vw4502 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 46.0 | 3.86e-01 | 73.6% | 89.1% |
| 2inbA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.66 | 48.0 | 3.69e-01 | 79.2% | 35.2% |
| 3axgK00 | 3.60.70.12 | Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase | 0.66 | 57.0 | 3.50e-01 | 100.0% | 23.1% |
| 3abfA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.65 | 53.0 | 5.06e-01 | 92.5% | 79.7% |
| 3m21F00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.64 | 53.0 | 4.92e-01 | 92.5% | 79.1% |
| 7nasX01 | 3.30.300.70 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › RimP-like superfamily, N-terminal | 0.64 | 49.0 | 4.36e-01 | 84.9% | 58.2% |
| 1dbrC00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 49.0 | 3.31e-01 | 84.9% | 61.4% |
| 1ygpA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.63 | 45.0 | 2.77e-01 | 77.4% | 60.1% |
| 3ej3C00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.63 | 52.0 | 4.99e-01 | 96.2% | 81.2% |
| 3hn0A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.62 | 48.0 | 3.25e-01 | 100.0% | 24.2% |
| 3kanA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.62 | 50.0 | 3.96e-01 | 92.5% | 43.6% |
| 2yc4C00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 46.0 | 3.29e-01 | 86.8% | 24.9% |
| 1mwwB00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.62 | 51.0 | 4.10e-01 | 100.0% | 83.9% |
| 1gyxA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.61 | 54.0 | 5.08e-01 | 100.0% | 92.2% |
| 1c25A00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.61 | 47.0 | 3.36e-01 | 84.9% | 82.6% |
| 3i3fB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.60 | 47.0 | 3.72e-01 | 100.0% | 38.3% |
| 3kizA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.60 | 50.0 | 3.83e-01 | 100.0% | 41.8% |
| 1m2oA05 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.60 | 45.0 | 3.70e-01 | 84.9% | 54.3% |
| 2hhcA02 | 3.40.50.11350 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 51.0 | 3.77e-01 | 96.2% | 78.2% |
| 3cisH00 | 3.40.50.12370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 50.0 | 3.25e-01 | 100.0% | 31.2% |
| 4i1tA02 | 3.30.70.2640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Arenavirus RNA polymerase | 0.60 | 46.0 | 4.01e-01 | 84.9% | 56.0% |
| 3cb2A02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.59 | 48.0 | 4.11e-01 | 100.0% | 53.5% |
| 1tvkA02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.57 | 46.0 | 3.79e-01 | 100.0% | 56.5% |
| 3rycB02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.57 | 46.0 | 3.79e-01 | 100.0% | 48.2% |
| 3vywA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 48.0 | 3.23e-01 | 100.0% | 67.2% |
| 5z6bA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 47.0 | 3.37e-01 | 100.0% | 66.5% |
| 1yrxC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 46.0 | 3.74e-01 | 92.5% | 66.3% |
| 1tvmA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 47.0 | 4.01e-01 | 98.1% | 75.3% |
| 2hlsA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 45.0 | 3.62e-01 | 100.0% | 70.8% |
| 4om8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 3.17e-01 | 100.0% | 63.2% |
| 2mcqA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.52 | 40.0 | 3.74e-01 | 92.5% | 97.3% |
| 3i9v202 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 42.0 | 3.50e-01 | 100.0% | 88.7% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2137603 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.71 | 57.0 | 5.53e-01 | 90.6% | 100.0% |
| 3283347 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.69 | 53.0 | 4.45e-01 | 84.9% | 47.4% |
| 4989438 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.69 | 55.0 | 5.31e-01 | 86.8% | 78.0% |
| 4975327 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.69 | 57.0 | 4.90e-01 | 92.5% | 57.6% |
| 3601180 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 53.0 | 3.40e-01 | 84.9% | 17.6% |
| 3715479 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.68 | 52.0 | 3.26e-01 | 84.9% | 14.5% |
| 3946041 | 315.1.1.5 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_2 | 0.67 | 51.0 | 4.94e-01 | 83.0% | 73.3% |
| 4177287 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.67 | 55.0 | 5.33e-01 | 92.5% | 85.0% |
| 5080188 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.66 | 55.0 | 5.33e-01 | 92.5% | 85.0% |
| 5057989 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.66 | 53.0 | 3.30e-01 | 86.8% | 74.5% |
| 4953115 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.65 | 54.0 | 5.20e-01 | 92.5% | 85.0% |
| 4122147 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.65 | 57.0 | 5.14e-01 | 100.0% | 89.3% |
| 2617481 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.65 | 53.0 | 5.07e-01 | 92.5% | 83.9% |
| 4961979 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.64 | 51.0 | 3.89e-01 | 100.0% | 35.7% |
| 5041752 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.63 | 56.0 | 4.35e-01 | 100.0% | 85.8% |
| 3956324 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 45.0 | 3.37e-01 | 84.9% | 28.1% |
| 1687981 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.61 | 42.0 | 3.51e-01 | 71.7% | 69.8% |
| 4936069 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.60 | 52.0 | 4.43e-01 | 100.0% | 61.1% |
| 3261893 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.59 | 51.0 | 3.95e-01 | 100.0% | 76.4% |
| 3255723 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.58 | 49.0 | 3.69e-01 | 100.0% | 66.2% |
| 3982398 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.58 | 43.0 | 3.02e-01 | 100.0% | 22.0% |
| 4928039 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.58 | 48.0 | 3.73e-01 | 100.0% | 65.4% |
| 3688138 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.58 | 44.0 | 3.81e-01 | 84.9% | 54.4% |
| 5042969 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.58 | 49.0 | 4.27e-01 | 100.0% | 62.4% |
| 4984150 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.57 | 49.0 | 4.25e-01 | 100.0% | 62.4% |
| 4024959 | 3676.1.1.0 ↗ | alpha duplicates or obligate multimers › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain | 0.56 | 50.0 | 3.03e-01 | 100.0% | 64.7% |
| 3363496 | 7528.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I | 0.55 | 38.0 | 3.21e-01 | 71.7% | 82.4% |
| 3834388 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.55 | 47.0 | 3.17e-01 | 100.0% | 44.4% |
| 3511352 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.55 | 45.0 | 3.78e-01 | 100.0% | 50.5% |
| 3474138 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 46.0 | 3.36e-01 | 100.0% | 92.3% |
| 3927668 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.53 | 45.0 | 3.06e-01 | 98.1% | 54.4% |
| 3652692 | 2485.1.1.86 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Alba | 0.53 | 43.0 | 3.00e-01 | 92.5% | 38.9% |
| 3670566 | 2007.1.3.33 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Receiver_CRE1 | 0.52 | 35.0 | 2.80e-01 | 71.7% | 80.9% |
| 4961576 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 44.0 | 3.04e-01 | 98.1% | 63.0% |