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gwa1_scaffold_0_prodigal-single.1__X__X__00047

Bact-Vir

gwa1_scaffold_0_prodigal-single.1__X__X__00047

Identity

Kingdom:
phage

Quality

86.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-85
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF14279.13 best HNH_5 52.2 6.60e-14 90.7% 83.9%
PF01844.30 HNH 44.7 1.70e-11 85.2% 100.0%
PF13395.13 HNH_4 28.9 1.20e-06 83.3% 70.4%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.83 77.0 6.54e-01 100.0% 71.1%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.82 75.0 5.39e-01 100.0% 47.9%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.78 51.0 4.66e-01 92.6% 51.4%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 52.0 3.84e-01 94.4% 29.1%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.72 55.0 5.35e-01 100.0% 74.2%
1m08A00 3.90.540.10 Alpha Beta › Alpha-Beta Complex › Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain › Colicin/pyocin, DNase domain 0.72 60.0 4.50e-01 92.6% 86.3%
3o58V00 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.68 52.0 5.15e-01 100.0% 79.7%
2cjsC01 3.30.60.120 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.68 46.0 5.16e-01 87.0% 100.0%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 54.0 4.61e-01 100.0% 56.8%
1x4uA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 56.0 5.20e-01 100.0% 82.6%
2xzm500 3.30.1740.20 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 0.63 53.0 4.34e-01 92.6% 69.4%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 51.0 4.32e-01 92.6% 55.8%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 47.0 4.70e-01 92.6% 81.5%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 55.0 4.18e-01 100.0% 44.7%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 41.0 2.87e-01 75.9% 23.5%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.59 49.0 4.22e-01 100.0% 66.0%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.58 50.0 4.60e-01 100.0% 97.2%
2fd4A00 3.30.40.110 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain 0.58 47.0 4.00e-01 100.0% 61.0%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.58 51.0 3.64e-01 100.0% 35.8%
1vd4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 34.0 3.29e-01 88.9% 58.1%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4839749 3821.1.1.0 a+b complex topology › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain 0.96 76.0 8.30e-01 83.3% 100.0%
4943720 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.94 84.0 6.14e-01 100.0% 40.8%
3317146 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.93 88.0 6.44e-01 100.0% 50.0%
4941657 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.93 86.0 7.59e-01 100.0% 74.7%
5019258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.93 86.0 7.38e-01 100.0% 70.0%
5070853 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.92 87.0 7.28e-01 100.0% 65.9%
3440476 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.92 86.0 6.43e-01 100.0% 52.1%
5016552 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.90 81.0 6.30e-01 100.0% 48.2%
3963404 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.90 77.0 6.26e-01 92.6% 69.5%
3950953 377.1.1.78 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 0.89 80.0 7.20e-01 100.0% 72.9%
3952818 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.89 80.0 7.04e-01 100.0% 68.9%
3277754 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.89 80.0 7.19e-01 100.0% 72.9%
3307439 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.89 82.0 6.12e-01 100.0% 49.2%
4959591 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.88 77.0 7.23e-01 94.4% 81.5%
4986026 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.87 73.0 4.93e-01 96.3% 26.5%
3965880 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.87 76.0 6.31e-01 94.4% 75.3%
4922670 3820.1.1.6 a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI, Cas9_RuvC 0.87 68.0 4.65e-01 83.3% 28.4%
4187709 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.87 80.0 4.64e-01 100.0% 20.0%
1144783 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.87 81.0 5.58e-01 100.0% 35.0%
2663386 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.86 78.0 5.40e-01 100.0% 53.8%
4999440 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.86 81.0 6.77e-01 100.0% 63.5%
2991844 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.86 79.0 6.14e-01 100.0% 59.6%
185780 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.85 79.0 6.34e-01 100.0% 60.8%
1684075 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.85 77.0 5.31e-01 100.0% 49.1%
4998487 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.85 78.0 6.34e-01 100.0% 56.8%
4989310 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.84 76.0 5.04e-01 98.1% 28.0%
3468455 376.1.3.16 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX 0.83 59.0 6.72e-01 92.6% 100.0%
4951302 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.82 73.0 6.80e-01 96.3% 87.7%
3705738 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.82 62.0 5.97e-01 94.4% 71.7%
2550470 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.82 73.0 5.10e-01 100.0% 37.3%
3372361 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 58.0 6.50e-01 90.7% 100.0%
3278018 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.81 66.0 6.57e-01 90.7% 85.5%
4839754 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.81 72.0 5.15e-01 100.0% 36.8%
5031996 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.81 58.0 5.80e-01 90.7% 74.5%
3286658 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.80 72.0 5.37e-01 100.0% 51.5%
3953218 378.1.1.23 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.80 71.0 5.10e-01 100.0% 72.9%
4466003 376.1.3.44 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva 0.80 55.0 5.20e-01 90.7% 60.0%
3587782 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.80 71.0 5.62e-01 100.0% 99.1%
5049537 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.79 67.0 5.51e-01 94.4% 53.2%
3590055 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.79 70.0 5.44e-01 100.0% 92.2%
3953524 378.1.1.23 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.78 69.0 4.94e-01 100.0% 74.2%
1291965 378.1.1.16 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DraIII 0.78 69.0 4.59e-01 100.0% 38.5%
2485694 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 67.0 5.02e-01 100.0% 49.3%
5049527 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.75 57.0 5.50e-01 83.3% 71.7%
3957069 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.75 66.0 4.73e-01 100.0% 41.2%
3953059 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.75 67.0 5.61e-01 100.0% 73.3%
4966182 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.75 66.0 5.02e-01 100.0% 53.6%
3846283 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 54.0 5.59e-01 94.4% 84.0%
3952776 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.74 64.0 6.06e-01 98.1% 80.0%
5034882 4203.1.1.0 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.74 57.0 6.20e-01 90.7% 100.0%
3952384 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 65.0 5.43e-01 100.0% 70.5%
4932123 377.7.1.2 few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH 0.74 65.0 6.02e-01 100.0% 81.4%
3607878 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 60.0 5.14e-01 88.9% 80.0%
3952892 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.74 65.0 4.99e-01 100.0% 54.4%
3952923 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.73 64.0 5.27e-01 100.0% 66.0%
3948700 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.73 64.0 4.92e-01 100.0% 88.7%
4981807 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.72 64.0 4.59e-01 100.0% 68.4%
3938379 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.72 60.0 5.59e-01 94.4% 73.8%
3913312 377.1.1.50 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.72 54.0 5.73e-01 100.0% 97.8%
3634446 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 50.0 5.31e-01 98.1% 88.9%
3300469 377.9.1.1 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.71 51.0 5.34e-01 98.1% 84.0%
2449258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.69 59.0 4.26e-01 100.0% 40.2%
4966035 376.1.3.98 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 0.69 57.0 5.54e-01 94.4% 83.3%
3402915 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 59.0 4.90e-01 100.0% 93.0%
3413090 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 60.0 5.21e-01 100.0% 98.8%
5010476 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 55.0 5.53e-01 98.1% 87.3%
3928956 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 54.0 5.41e-01 100.0% 85.5%
3171690 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 58.0 4.96e-01 94.4% 62.4%
4941505 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 56.0 5.28e-01 90.7% 86.2%
3244228 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 55.0 5.40e-01 94.4% 86.7%
5076107 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 55.0 4.78e-01 92.6% 78.8%
5024194 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 55.0 4.88e-01 92.6% 80.0%
5066402 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 54.0 5.02e-01 92.6% 86.8%
3722098 376.1.1.61 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.64 47.0 4.53e-01 98.1% 67.7%
3592446 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 54.0 4.25e-01 92.6% 61.8%
1438058 377.1.1.8 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.63 52.0 4.35e-01 92.6% 71.0%
3307915 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 56.0 5.22e-01 98.1% 86.2%
4946657 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.61 51.0 4.82e-01 92.6% 96.9%
3838031 377.4.1.1 few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › YlxR 0.60 53.0 4.78e-01 100.0% 76.0%
3430765 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.60 51.0 4.22e-01 100.0% 53.0%
3438467 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 50.0 4.32e-01 100.0% 58.9%
3386384 377.4.1.1 few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › YlxR 0.59 51.0 4.64e-01 98.1% 72.0%
3186992 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 51.0 4.14e-01 98.1% 66.7%
4946781 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 4.30e-01 88.9% 88.9%
4458271 223.3.1.3 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.51 41.0 2.62e-01 94.4% 62.6%