←Back to structures
gwa1_scaffold_0_prodigal-single.1__X__X__00080
Bact-Virgwa1_scaffold_0_prodigal-single.1__X__X__00080
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-69
Domain cluster:
representative
CATH (60)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 62.0 | 5.84e-01 | 78.3% | 88.9% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 57.0 | 5.38e-01 | 73.9% | 100.0% |
| 4i0xH00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.80 | 59.0 | 5.72e-01 | 78.3% | 100.0% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.79 | 58.0 | 6.13e-01 | 78.3% | 88.7% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 57.0 | 5.22e-01 | 76.8% | 90.1% |
| 2np9A01 | 1.20.58.1300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 57.0 | 4.55e-01 | 76.8% | 41.8% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.78 | 54.0 | 5.69e-01 | 79.7% | 82.0% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 57.0 | 5.68e-01 | 78.3% | 91.5% |
| 3u0cA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.77 | 59.0 | 4.50e-01 | 81.2% | 53.0% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 56.0 | 5.85e-01 | 78.3% | 90.5% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.77 | 59.0 | 5.73e-01 | 84.1% | 80.8% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 57.0 | 5.48e-01 | 81.2% | 76.5% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.76 | 57.0 | 5.51e-01 | 79.7% | 74.0% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.76 | 50.0 | 5.32e-01 | 72.5% | 77.0% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.76 | 61.0 | 5.30e-01 | 88.4% | 89.6% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 53.0 | 5.03e-01 | 72.5% | 72.5% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.75 | 54.0 | 5.05e-01 | 78.3% | 62.4% |
| 1bf5A01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.74 | 56.0 | 4.22e-01 | 81.2% | 33.9% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 55.0 | 4.86e-01 | 81.2% | 55.8% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.74 | 53.0 | 5.47e-01 | 79.7% | 80.0% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 54.0 | 5.84e-01 | 76.8% | 94.7% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.74 | 51.0 | 5.45e-01 | 72.5% | 100.0% |
| 5dkoA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.73 | 50.0 | 3.76e-01 | 71.0% | 29.9% |
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.73 | 54.0 | 4.98e-01 | 79.7% | 79.5% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.72 | 61.0 | 5.39e-01 | 92.8% | 66.3% |
| 2qksA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 55.0 | 4.72e-01 | 81.2% | 84.9% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.72 | 53.0 | 4.79e-01 | 81.2% | 65.7% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 57.0 | 4.28e-01 | 85.5% | 93.7% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.71 | 56.0 | 4.11e-01 | 85.5% | 65.6% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 51.0 | 5.03e-01 | 76.8% | 73.0% |
| 5k3hB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 58.0 | 4.74e-01 | 92.8% | 65.4% |
| 6h2dS01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.70 | 61.0 | 4.29e-01 | 98.6% | 39.0% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 54.0 | 5.02e-01 | 82.6% | 68.6% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.70 | 53.0 | 4.23e-01 | 82.6% | 46.9% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 52.0 | 5.47e-01 | 81.2% | 91.7% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.69 | 60.0 | 5.08e-01 | 98.6% | 69.5% |
| 3craB01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.69 | 48.0 | 4.51e-01 | 73.9% | 62.8% |
| 3cqcA00 | 1.20.190.50 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › | 0.69 | 59.0 | 4.01e-01 | 95.7% | 49.0% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 52.0 | 4.83e-01 | 79.7% | 69.0% |
| 1jvmB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 50.0 | 4.49e-01 | 79.7% | 88.0% |
| 6xj1A01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.68 | 58.0 | 4.05e-01 | 98.6% | 76.7% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 50.0 | 4.87e-01 | 81.2% | 77.2% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 52.0 | 4.69e-01 | 85.5% | 60.6% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.67 | 41.0 | 4.33e-01 | 88.4% | 69.4% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 49.0 | 4.37e-01 | 81.2% | 86.4% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 48.0 | 4.95e-01 | 79.7% | 83.1% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.66 | 55.0 | 4.74e-01 | 95.7% | 93.0% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.64 | 42.0 | 3.89e-01 | 76.8% | 51.1% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.63 | 46.0 | 4.60e-01 | 81.2% | 94.6% |
| 5dn6J00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.63 | 47.0 | 4.67e-01 | 82.6% | 85.1% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 44.0 | 4.12e-01 | 75.4% | 92.0% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 51.0 | 5.24e-01 | 100.0% | 93.8% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.62 | 55.0 | 4.55e-01 | 100.0% | 76.0% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.61 | 40.0 | 3.93e-01 | 84.1% | 59.5% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.60 | 46.0 | 4.22e-01 | 91.3% | 61.1% |
| 3qa8A04 | 1.20.1270.250 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 49.0 | 3.45e-01 | 92.8% | 68.2% |
| 3nc3B00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 52.0 | 3.27e-01 | 100.0% | 25.5% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.58 | 52.0 | 4.05e-01 | 100.0% | 64.2% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.56 | 49.0 | 4.20e-01 | 97.1% | 80.7% |
| 1d8bA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.52 | 38.0 | 3.69e-01 | 98.6% | 69.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3676390 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.81 | 62.0 | 5.09e-01 | 81.2% | 52.5% |
| 5039854 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 59.0 | 5.78e-01 | 82.6% | 72.0% |
| 3486312 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.79 | 67.0 | 5.60e-01 | 94.2% | 78.2% |
| 3471712 | 604.8.1.0 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo | 0.79 | 59.0 | 4.87e-01 | 81.2% | 48.8% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.78 | 59.0 | 5.30e-01 | 81.2% | 61.1% |
| 4045132 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.78 | 59.0 | 5.02e-01 | 81.2% | 70.9% |
| 3708789 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.77 | 59.0 | 5.28e-01 | 81.2% | 65.3% |
| 3944731 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.77 | 59.0 | 4.39e-01 | 81.2% | 87.9% |
| 3956826 | 150.8.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE | 0.77 | 58.0 | 4.34e-01 | 81.2% | 35.9% |
| 3976215 | 105.2.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C | 0.77 | 58.0 | 4.47e-01 | 81.2% | 40.0% |
| 3477418 | 4992.1.1.12 ↗ | extended segments › RelB-like › RelB-like › RelB-like › LIN9_C | 0.77 | 58.0 | 5.25e-01 | 81.2% | 70.5% |
| 3693258 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.77 | 57.0 | 4.90e-01 | 79.7% | 53.6% |
| 4086306 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.77 | 58.0 | 4.02e-01 | 81.2% | 37.8% |
| 3476064 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.77 | 62.0 | 5.15e-01 | 88.4% | 74.2% |
| 3241030 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.76 | 58.0 | 3.71e-01 | 81.2% | 20.6% |
| 3660496 | 604.3.1.19 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF3475 | 0.76 | 62.0 | 4.28e-01 | 88.4% | 80.4% |
| 3517330 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.76 | 57.0 | 4.02e-01 | 79.7% | 61.9% |
| 4960548 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.76 | 58.0 | 4.30e-01 | 82.6% | 35.0% |
| 3840952 | 601.19.1.39 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C | 0.76 | 56.0 | 5.44e-01 | 76.8% | 100.0% |
| 3403130 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.76 | 63.0 | 4.71e-01 | 89.9% | 62.4% |
| 4468389 | 5086.1.1.101 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › SH3BP5 | 0.76 | 57.0 | 4.76e-01 | 81.2% | 57.5% |
| 3430567 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.76 | 53.0 | 5.57e-01 | 78.3% | 83.3% |
| 3504347 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.74 | 53.0 | 4.78e-01 | 75.4% | 72.6% |
| 3593009 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.74 | 58.0 | 5.58e-01 | 98.6% | 73.8% |
| 3933048 | 4992.1.1.12 ↗ | extended segments › RelB-like › RelB-like › RelB-like › LIN9_C | 0.73 | 61.0 | 5.37e-01 | 91.3% | 81.0% |
| 4934657 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.73 | 59.0 | 4.49e-01 | 89.9% | 70.9% |
| 3904047 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.73 | 54.0 | 3.95e-01 | 79.7% | 31.9% |
| 4396574 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.72 | 62.0 | 4.80e-01 | 100.0% | 93.9% |
| 3503635 | 605.1.1.133 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › OST3_OST6 | 0.72 | 63.0 | 5.31e-01 | 100.0% | 84.2% |
| 3429164 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.72 | 52.0 | 4.75e-01 | 95.7% | 56.8% |
| 3380124 | 109.4.1.1266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB | 0.72 | 52.0 | 3.30e-01 | 79.7% | 14.8% |
| 3838987 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.71 | 56.0 | 4.01e-01 | 85.5% | 43.0% |
| 4957532 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.71 | 62.0 | 5.06e-01 | 98.6% | 53.1% |
| 3754639 | 150.5.1.106 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C | 0.70 | 59.0 | 5.53e-01 | 92.8% | 98.8% |
| 3872946 | 601.19.1.55 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28139 | 0.70 | 60.0 | 3.73e-01 | 97.1% | 87.7% |
| 4634964 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.69 | 55.0 | 4.75e-01 | 92.8% | 54.5% |
| 3260684 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.69 | 51.0 | 5.51e-01 | 85.5% | 100.0% |
| 4316383 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.69 | 54.0 | 4.84e-01 | 85.5% | 61.1% |
| 3938459 | 5076.2.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › EI24 | 0.67 | 52.0 | 3.54e-01 | 85.5% | 23.8% |
| 3780651 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.67 | 56.0 | 5.71e-01 | 92.8% | 100.0% |
| 3489440 | 4992.1.1.6 ↗ | extended segments › RelB-like › RelB-like › RelB-like › MENTAL | 0.66 | 57.0 | 5.62e-01 | 100.0% | 93.3% |
| 3821144 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.66 | 57.0 | 3.32e-01 | 97.1% | 26.3% |
| 3584009 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.65 | 56.0 | 3.88e-01 | 100.0% | 33.1% |
| 3468223 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.64 | 57.0 | 3.61e-01 | 98.6% | 97.4% |
| None | — | 0.64 | 57.0 | 3.88e-01 | 100.0% | 64.0% | |
| 5038865 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.62 | 54.0 | 4.60e-01 | 95.7% | 80.0% |
D2
medium
residues 70-146
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.90 | 63.0 | 6.63e-01 | 87.0% | 78.9% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.83 | 44.0 | 4.04e-01 | 81.8% | 43.2% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.82 | 58.0 | 4.58e-01 | 97.4% | 38.6% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.82 | 47.0 | 3.67e-01 | 94.8% | 28.8% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 56.0 | 5.30e-01 | 87.0% | 61.1% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.81 | 57.0 | 5.60e-01 | 100.0% | 68.3% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 73.0 | 5.57e-01 | 100.0% | 56.0% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.77 | 61.0 | 6.32e-01 | 94.8% | 90.1% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 65.0 | 6.14e-01 | 88.3% | 78.4% |
| 2q9rA01 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.75 | 55.0 | 4.07e-01 | 77.9% | 78.5% |
| 4adzA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.73 | 53.0 | 5.03e-01 | 94.8% | 64.4% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.73 | 54.0 | 5.33e-01 | 100.0% | 73.8% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 56.0 | 4.54e-01 | 98.7% | 43.5% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.72 | 46.0 | 4.91e-01 | 87.0% | 74.6% |
| 2ficB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.71 | 65.0 | 4.70e-01 | 100.0% | 38.8% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 60.0 | 5.46e-01 | 98.7% | 69.6% |
| 3i2wA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.70 | 56.0 | 3.80e-01 | 93.5% | 25.2% |
| 1t98A02 | 1.20.58.590 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain | 0.70 | 60.0 | 4.71e-01 | 98.7% | 45.4% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.69 | 47.0 | 4.76e-01 | 72.7% | 70.1% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 47.0 | 4.36e-01 | 84.4% | 54.5% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.69 | 51.0 | 4.87e-01 | 98.7% | 67.8% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.69 | 55.0 | 4.17e-01 | 85.7% | 62.4% |
| 1i4dA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.67 | 59.0 | 4.48e-01 | 100.0% | 50.5% |
| 2rekA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 40.0 | 3.11e-01 | 74.0% | 27.9% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 54.0 | 4.93e-01 | 88.3% | 84.8% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.64 | 48.0 | 4.68e-01 | 89.6% | 72.9% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 54.0 | 4.76e-01 | 93.5% | 76.1% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.63 | 46.0 | 3.77e-01 | 76.6% | 43.6% |
| 3s84A02 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.62 | 55.0 | 4.39e-01 | 100.0% | 49.0% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 47.0 | 4.78e-01 | 83.1% | 85.3% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 46.0 | 4.24e-01 | 83.1% | 64.3% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 42.0 | 2.89e-01 | 75.3% | 26.5% |
| 4mk6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 38.0 | 2.87e-01 | 71.4% | 27.7% |
| 8e9gJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.57 | 42.0 | 3.26e-01 | 77.9% | 68.9% |
| 3jsjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 44.0 | 3.31e-01 | 83.1% | 65.6% |
| 3kkdA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 43.0 | 3.17e-01 | 87.0% | 38.4% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.52 | 49.0 | 4.41e-01 | 100.0% | 96.1% |
| 6humG01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.52 | 41.0 | 3.23e-01 | 85.7% | 71.9% |
| 3dpjF00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.18e-01 | 89.6% | 38.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4024277 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.96 | 64.0 | 6.58e-01 | 96.1% | 70.7% |
| 3737505 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.94 | 63.0 | 6.41e-01 | 96.1% | 70.7% |
| 3945729 | 604.32.1.0 ↗ | alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY | 0.88 | 82.0 | 6.77e-01 | 100.0% | 65.4% |
| 4613072 | 101.1.2.721 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27113 | 0.87 | 54.0 | 4.08e-01 | 90.9% | 29.7% |
| 3609798 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.84 | 47.0 | 4.06e-01 | 98.7% | 38.3% |
| 5005598 | 192.29.1.310 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF29251 | 0.84 | 64.0 | 5.04e-01 | 79.2% | 47.6% |
| 3585148 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.82 | 74.0 | 5.12e-01 | 100.0% | 33.3% |
| 3608116 | 5086.1.1.177 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › KIF9 | 0.81 | 78.0 | 6.08e-01 | 100.0% | 64.8% |
| 3189488 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.80 | 57.0 | 5.01e-01 | 96.1% | 51.8% |
| 4935333 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.80 | 76.0 | 5.91e-01 | 100.0% | 65.3% |
| 3720488 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.79 | 57.0 | 4.71e-01 | 88.3% | 44.6% |
| 3404638 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.78 | 52.0 | 4.77e-01 | 88.3% | 53.0% |
| 3774116 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.77 | 47.0 | 4.11e-01 | 84.4% | 42.7% |
| 3412574 | 3291.1.1.82 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING | 0.76 | 66.0 | 5.49e-01 | 100.0% | 56.2% |
| 3304061 | 3016.1.1.5 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SHMT | 0.75 | 52.0 | 4.20e-01 | 79.2% | 37.3% |
| 3864054 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.75 | 69.0 | 5.77e-01 | 100.0% | 60.8% |
| 3642682 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.75 | 63.0 | 5.37e-01 | 88.3% | 60.0% |
| 3432902 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.75 | 63.0 | 5.37e-01 | 88.3% | 60.0% |
| 3593398 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.74 | 53.0 | 4.65e-01 | 79.2% | 50.4% |
| 3990854 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.73 | 63.0 | 5.98e-01 | 93.5% | 81.1% |
| 3191636 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.73 | 67.0 | 4.66e-01 | 100.0% | 33.0% |
| 3416168 | 4177.1.1.4 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD | 0.73 | 68.0 | 4.75e-01 | 100.0% | 35.5% |
| 375927 | 150.1.1.14 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like | 0.72 | 41.0 | 3.86e-01 | 93.5% | 46.7% |
| 3961790 | 150.8.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE | 0.72 | 65.0 | 5.36e-01 | 100.0% | 57.7% |
| 3240929 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.71 | 65.0 | 4.65e-01 | 100.0% | 37.7% |
| 3684835 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.71 | 58.0 | 5.35e-01 | 89.6% | 69.5% |
| 3529736 | 3755.3.1.316 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ATRX_C | 0.71 | 65.0 | 5.31e-01 | 100.0% | 57.7% |
| 4026031 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.70 | 64.0 | 4.48e-01 | 100.0% | 52.2% |
| 3469701 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.70 | 63.0 | 4.47e-01 | 100.0% | 33.8% |
| 3967621 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.70 | 47.0 | 3.53e-01 | 85.7% | 28.6% |
| 3657504 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.70 | 66.0 | 5.31e-01 | 100.0% | 60.0% |
| 3553862 | 4177.1.1.61 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PLC-beta_C | 0.70 | 63.0 | 4.35e-01 | 100.0% | 38.4% |
| 4030597 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.65 | 50.0 | 4.66e-01 | 87.0% | 66.3% |
| 4952624 | 3843.1.1.29 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF2105 | 0.65 | 45.0 | 4.43e-01 | 74.0% | 65.9% |
| 4528712 | 109.4.1.3083 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29810 | 0.64 | 54.0 | 3.65e-01 | 90.9% | 25.9% |
| 3732369 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.63 | 50.0 | 3.76e-01 | 89.6% | 89.2% |
| 3429331 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.61 | 54.0 | 3.90e-01 | 97.4% | 83.3% |
| 3257705 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.61 | 45.0 | 4.19e-01 | 77.9% | 66.3% |
| 4113418 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.57 | 51.0 | 4.61e-01 | 98.7% | 81.0% |
| 4029248 | 4984.1.1.0 ↗ | alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain | 0.57 | 45.0 | 3.66e-01 | 88.3% | 46.0% |
| 2578415 | 3579.1.1.1 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Oxidored_q3 | 0.56 | 42.0 | 3.25e-01 | 79.2% | 66.5% |
| 4968317 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.56 | 45.0 | 3.01e-01 | 87.0% | 26.2% |
| 3706386 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.53 | 43.0 | 3.65e-01 | 85.7% | 64.2% |
| 3403194 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 48.0 | 3.46e-01 | 100.0% | 53.8% |
| 3602968 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.51 | 41.0 | 3.64e-01 | 90.9% | 95.8% |
| 3287821 | 2002.1.1.50 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase | 0.51 | 43.0 | 2.93e-01 | 92.2% | 25.9% |