←Back to structures

gwa1_scaffold_0_prodigal-single.1__X__X__00198

Bact-Vir

gwa1_scaffold_0_prodigal-single.1__X__X__00198

Identity

Kingdom:
phage

Quality

71.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.72 47.0 4.41e-01 92.2% 54.3%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.71 45.0 4.57e-01 82.8% 66.1%
2m6mA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.70 46.0 4.21e-01 85.9% 51.8%
1wigA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.68 46.0 4.42e-01 92.2% 61.6%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.67 52.0 4.55e-01 84.4% 56.7%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.67 52.0 5.01e-01 84.4% 76.4%
2fd4A00 3.30.40.110 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain 0.60 51.0 4.38e-01 96.9% 64.8%
3m1cA01 3.10.360.40 Alpha Beta › Roll › Antimicrobial Peptide, Beta-defensin 2; Chain A › 0.58 40.0 4.35e-01 71.9% 98.1%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 3.73e-01 100.0% 59.7%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.56 50.0 4.59e-01 100.0% 79.5%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 37.0 3.46e-01 100.0% 55.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 35.0 3.54e-01 92.2% 66.2%
3bqjA01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.53 42.0 3.19e-01 98.4% 53.3%
3p8aA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 37.0 2.88e-01 81.2% 75.0%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 32.0 3.20e-01 100.0% 62.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961820 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.85 61.0 6.32e-01 82.8% 80.0%
4936660 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.74 57.0 6.03e-01 100.0% 96.4%
3311213 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.74 49.0 4.65e-01 82.8% 58.7%
3993483 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.70 61.0 5.25e-01 100.0% 71.4%
3599253 3167.1.1.0 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) 0.68 53.0 4.92e-01 84.4% 68.8%
2673846 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.66 51.0 4.75e-01 84.4% 67.5%
3204200 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 50.0 5.03e-01 82.8% 84.6%
3707346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 42.0 3.84e-01 100.0% 49.4%
3229165 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.65 50.0 4.56e-01 84.4% 64.8%
4654276 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.65 58.0 4.90e-01 100.0% 79.0%
4983088 259.1.1.2 ↗ a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e 0.63 51.0 4.40e-01 89.1% 98.0%
3951961 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.61 43.0 3.77e-01 100.0% 49.5%
3319789 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.61 39.0 3.59e-01 100.0% 48.2%
3828937 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.61 51.0 4.98e-01 90.6% 82.9%
4335575 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 42.0 2.35e-01 100.0% 5.2%
3700330 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 45.0 4.19e-01 82.8% 81.2%
None — 0.58 43.0 3.12e-01 82.8% 64.4%
3470496 366.1.1.1 ↗ few secondary structure elements › Blood coagulation inhibitor (disintegrin) › Blood coagulation inhibitor (disintegrin) › Blood coagulation inhibitor (disintegrin) › Disintegrin 0.56 41.0 3.37e-01 79.7% 56.8%
3492201 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.54 36.0 3.47e-01 100.0% 60.0%
3710833 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 35.0 2.67e-01 73.4% 84.9%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.51 31.0 3.07e-01 100.0% 54.3%