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gwa1_scaffold_0_prodigal-single.1__X__X__00201
Bact-Virgwa1_scaffold_0_prodigal-single.1__X__X__00201
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-82
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aqcB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 45.0 | 3.89e-01 | 83.1% | 58.2% |
| 3qdkA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 43.0 | 3.02e-01 | 83.1% | 48.0% |
| 2drvA00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.56 | 39.0 | 2.92e-01 | 71.4% | 69.6% |
| 1kkmB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 40.0 | 3.08e-01 | 76.6% | 93.8% |
| 2d4aA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.54 | 42.0 | 3.27e-01 | 83.1% | 48.1% |
| 6nyyE01 | 1.20.58.760 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 | 0.52 | 40.0 | 3.15e-01 | 83.1% | 76.9% |
| 1i0zA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.50 | 38.0 | 2.99e-01 | 81.8% | 49.4% |
| 4qqwA01 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.50 | 38.0 | 2.70e-01 | 81.8% | 53.7% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3693194 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.61 | 44.0 | 4.14e-01 | 79.2% | 62.0% |
| 3269373 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 47.0 | 4.51e-01 | 88.3% | 90.0% |
| 3773509 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.58 | 40.0 | 4.36e-01 | 72.7% | 95.0% |
| 4562140 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.57 | 34.0 | 3.72e-01 | 74.0% | 75.0% |
| 4224102 | 874.1.1.1 ↗ | a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge | 0.55 | 48.0 | 3.11e-01 | 100.0% | 54.6% |
| 3349813 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.55 | 39.0 | 2.81e-01 | 75.3% | 42.5% |
| 4264593 | 279.1.1.1 ↗ | a+b complex topology › LDH C-terminal domain-like › LDH C-terminal domain-like › LDH C-terminal domain-like › Ldh_1_C | 0.55 | 43.0 | 3.29e-01 | 83.1% | 45.6% |
| 4538574 | 279.1.1.1 ↗ | a+b complex topology › LDH C-terminal domain-like › LDH C-terminal domain-like › LDH C-terminal domain-like › Ldh_1_C | 0.55 | 43.0 | 3.28e-01 | 83.1% | 45.3% |
| 4215459 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.55 | 33.0 | 3.50e-01 | 74.0% | 69.2% |
| 4023242 | 220.1.1.187 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C | 0.54 | 42.0 | 3.64e-01 | 85.7% | 95.2% |
| 3939128 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 43.0 | 3.91e-01 | 89.6% | 81.8% |
| 2589766 | 4070.1.1.1 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 | 0.54 | 40.0 | 2.91e-01 | 81.8% | 59.6% |
| 3493556 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 42.0 | 3.83e-01 | 88.3% | 86.4% |
| 3973432 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.54 | 27.0 | 2.40e-01 | 72.7% | 34.3% |
| 4851660 | 206.1.1.67 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › HopBF1_kinase | 0.52 | 36.0 | 2.78e-01 | 72.7% | 72.0% |
| 5026168 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.51 | 43.0 | 3.58e-01 | 100.0% | 67.1% |
| 4998955 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 40.0 | 3.43e-01 | 89.6% | 98.5% |
| 4439153 | 3747.1.1.1 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod | 0.50 | 44.0 | 3.74e-01 | 100.0% | 88.7% |
| 4127802 | 2487.1.1.10 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_2_N | 0.50 | 37.0 | 2.77e-01 | 77.9% | 63.0% |