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gwa1_scaffold_0_prodigal-single.1__X__X__00215
Bact-Virgwa1_scaffold_0_prodigal-single.1__X__X__00215
Identity
- Kingdom:
- phage
Quality
70.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-61
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a36A04 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.86 | 60.0 | 4.14e-01 | 72.4% | 24.6% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.84 | 57.0 | 5.29e-01 | 70.7% | 57.7% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.81 | 55.0 | 5.14e-01 | 87.9% | 57.7% |
| 4fppB01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.77 | 53.0 | 5.00e-01 | 72.4% | 64.8% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 57.0 | 4.90e-01 | 91.4% | 71.7% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.69 | 54.0 | 3.90e-01 | 86.2% | 53.0% |
| 4kl0A00 | 3.90.245.10 | Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like | 0.68 | 60.0 | 3.70e-01 | 100.0% | 72.9% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.64 | 56.0 | 4.38e-01 | 100.0% | 46.2% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 46.0 | 4.21e-01 | 77.6% | 67.9% |
| 3bujA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.63 | 54.0 | 3.31e-01 | 100.0% | 16.1% |
| 3k9vA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 50.0 | 2.99e-01 | 100.0% | 22.0% |
| 1vfiA00 | 1.10.246.100 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 | 0.57 | 47.0 | 4.09e-01 | 96.6% | 86.3% |
| 1w53A00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.53 | 47.0 | 4.18e-01 | 100.0% | 91.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4524825 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.88 | 71.0 | 5.83e-01 | 96.6% | 51.6% |
| 4993195 | 632.6.1.15 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › PF26119 | 0.81 | 59.0 | 4.96e-01 | 93.1% | 47.4% |
| 4946791 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 54.0 | 4.96e-01 | 70.7% | 56.0% |
| 1203190 | 192.3.1.1 ↗ | alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N | 0.80 | 54.0 | 4.58e-01 | 87.9% | 44.1% |
| 3901696 | 192.8.1.240 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › HR1 | 0.75 | 59.0 | 5.18e-01 | 86.2% | 68.2% |
| 3241943 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.74 | 56.0 | 3.71e-01 | 81.0% | 44.1% |
| 3911582 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.74 | 61.0 | 4.42e-01 | 89.7% | 53.3% |
| 3499614 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 57.0 | 3.52e-01 | 86.2% | 26.7% |
| 3659886 | 603.1.1.119 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF4220 | 0.72 | 63.0 | 4.28e-01 | 98.3% | 67.1% |
| 3916403 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.71 | 65.0 | 5.68e-01 | 100.0% | 87.1% |
| 3908020 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.71 | 64.0 | 4.76e-01 | 98.3% | 45.2% |
| 4014512 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 61.0 | 4.15e-01 | 96.6% | 35.0% |
| 4957831 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.68 | 46.0 | 3.34e-01 | 74.1% | 24.8% |
| 3675439 | 5059.1.1.52 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › PAP2 | 0.64 | 55.0 | 4.27e-01 | 98.3% | 44.6% |
| 3694582 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.63 | 52.0 | 3.13e-01 | 100.0% | 14.5% |
| 3496557 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 54.0 | 3.08e-01 | 100.0% | 19.4% |
| 3456216 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.56 | 44.0 | 3.75e-01 | 94.8% | 60.9% |