←Back to structures

gwa1_scaffold_0_prodigal-single.1__X__X__00265

Bact-Vir

gwa1_scaffold_0_prodigal-single.1__X__X__00265

Identity

Kingdom:
phage

Quality

75.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.62 49.0 4.37e-01 87.3% 91.1%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.49e-01 83.6% 61.2%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 44.0 3.90e-01 85.5% 98.9%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 39.0 3.55e-01 70.9% 67.1%
1bxoA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.56 39.0 2.84e-01 72.7% 95.2%
3kbgA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.56 40.0 3.58e-01 78.2% 67.9%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.56e-01 87.3% 62.1%
1g3pA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.55 37.0 3.27e-01 70.9% 55.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 3.93e-01 83.6% 83.1%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 42.0 3.70e-01 92.7% 78.7%
4nkbB02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 40.0 3.48e-01 83.6% 93.3%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 40.0 2.56e-01 81.8% 41.8%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.51 38.0 3.35e-01 85.5% 100.0%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 2.92e-01 80.0% 63.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3610326 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.60 38.0 4.28e-01 85.5% 90.0%
3248163 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 47.0 3.49e-01 85.5% 54.3%
3273591 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 46.0 3.50e-01 83.6% 51.5%
3705470 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.59 40.0 4.26e-01 90.9% 84.4%
5039349 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 40.0 3.91e-01 70.9% 100.0%
3527354 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 43.0 3.28e-01 83.6% 59.3%
3815721 375.1.1.52 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.56 39.0 3.96e-01 76.4% 74.5%
3210799 375.1.1.52 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.54 41.0 3.94e-01 83.6% 71.9%
5030549 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.54 36.0 3.68e-01 74.5% 70.9%
5019386 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 38.0 4.08e-01 90.9% 97.8%
4950325 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.53 36.0 3.17e-01 74.5% 45.9%
4981108 375.1.1.331 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5817 0.53 36.0 3.79e-01 74.5% 86.7%
3981534 375.1.1.197 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF1451 0.53 37.0 3.88e-01 100.0% 93.3%
4947213 375.1.3.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.53 35.0 3.59e-01 74.5% 70.9%
4607892 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 34.0 3.66e-01 76.4% 87.5%
2172423 3529.1.1.4 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_4 0.52 33.0 3.48e-01 87.3% 72.0%
4937762 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.52 37.0 3.16e-01 74.5% 47.8%
3655121 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 39.0 2.33e-01 83.6% 16.3%
5060529 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.51 35.0 3.36e-01 80.0% 58.6%
5034126 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.51 35.0 3.51e-01 78.2% 68.3%
5078006 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.50 35.0 3.34e-01 80.0% 60.0%