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gwa1_scaffold_0_prodigal-single.1__X__X__00299
Bact-Virgwa1_scaffold_0_prodigal-single.1__X__X__00299
Identity
- Kingdom:
- phage
Quality
63.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-79
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 47.0 | 4.70e-01 | 81.9% | 68.0% |
| 1mzbA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 47.0 | 4.52e-01 | 83.3% | 62.2% |
| 4behA01 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 43.0 | 4.52e-01 | 75.0% | 79.7% |
| 4usaA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.62 | 49.0 | 4.18e-01 | 86.1% | 53.8% |
| 3v53E00 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.62 | 55.0 | 4.90e-01 | 98.6% | 95.1% |
| 1urvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 49.0 | 3.89e-01 | 88.9% | 93.5% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.62 | 43.0 | 3.53e-01 | 72.2% | 61.1% |
| 6s8bA01 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.61 | 50.0 | 4.07e-01 | 93.1% | 96.6% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 41.0 | 4.24e-01 | 79.2% | 73.9% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 45.0 | 4.41e-01 | 79.2% | 93.7% |
| 1n81A00 | 1.10.3030.10 | Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 | 0.60 | 49.0 | 3.76e-01 | 94.4% | 57.0% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 43.0 | 3.86e-01 | 76.4% | 94.2% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 3.93e-01 | 83.3% | 59.3% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 41.0 | 4.07e-01 | 80.6% | 70.3% |
| 1pprM01 | 1.40.10.10 | Mainly Alpha › Alpha solenoid › Peridinin-chlorophyll Protein, Chain M › Peridinin-chlorophyll A binding | 0.58 | 46.0 | 3.72e-01 | 90.3% | 53.5% |
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.58 | 49.0 | 4.34e-01 | 97.2% | 88.1% |
| 2xvtC00 | 1.10.150.510 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family | 0.58 | 40.0 | 3.93e-01 | 72.2% | 86.1% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 44.0 | 4.38e-01 | 84.7% | 96.0% |
| 3fm9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 42.0 | 4.15e-01 | 79.2% | 73.1% |
| 2o71A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 41.0 | 3.92e-01 | 79.2% | 90.1% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 39.0 | 4.04e-01 | 79.2% | 74.3% |
| 4fqnC00 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.56 | 44.0 | 4.26e-01 | 94.4% | 76.5% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 41.0 | 4.11e-01 | 80.6% | 80.0% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.56 | 44.0 | 4.20e-01 | 88.9% | 80.2% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 46.0 | 4.65e-01 | 98.6% | 95.9% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 39.0 | 3.30e-01 | 80.6% | 71.8% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.52 | 30.0 | 3.09e-01 | 87.5% | 56.9% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.52 | 39.0 | 3.69e-01 | 83.3% | 92.2% |
| 1nd4A02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 43.0 | 3.41e-01 | 100.0% | 64.5% |
| 4b4yA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 43.0 | 3.54e-01 | 100.0% | 94.6% |
| 3mvuA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.51 | 43.0 | 3.08e-01 | 94.4% | 85.3% |
| 2bkkC02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.50 | 42.0 | 3.33e-01 | 100.0% | 57.8% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3886268 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.82 | 64.0 | 5.49e-01 | 83.3% | 57.3% |
| 5068885 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.79 | 54.0 | 4.97e-01 | 79.2% | 56.7% |
| 1503419 | 3919.1.1.1 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD9_HN | 0.75 | 65.0 | 5.48e-01 | 100.0% | 58.0% |
| 3404059 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.73 | 59.0 | 5.06e-01 | 93.1% | 55.7% |
| 4397698 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.73 | 61.0 | 5.16e-01 | 93.1% | 58.3% |
| 3890108 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.73 | 57.0 | 4.95e-01 | 88.9% | 55.5% |
| 3799615 | 509.1.1.2 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › CCM2_C | 0.73 | 59.0 | 5.38e-01 | 90.3% | 68.4% |
| 3467989 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 47.0 | 5.05e-01 | 81.9% | 83.3% |
| 3219897 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 44.0 | 5.07e-01 | 76.4% | 92.0% |
| 4025261 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 52.0 | 4.55e-01 | 83.3% | 61.8% |
| 4984393 | 179.1.1.1 ↗ | alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 | 0.68 | 53.0 | 5.30e-01 | 86.1% | 82.7% |
| 4473108 | 3198.1.1.1 ↗ | alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA | 0.67 | 56.0 | 4.86e-01 | 94.4% | 68.7% |
| 4027348 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.67 | 52.0 | 5.16e-01 | 83.3% | 78.7% |
| 3196401 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 44.0 | 4.86e-01 | 72.2% | 89.1% |
| 3417440 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.66 | 44.0 | 3.66e-01 | 76.4% | 37.0% |
| 4556778 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.66 | 54.0 | 4.72e-01 | 93.1% | 58.3% |
| 3342850 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.65 | 50.0 | 4.95e-01 | 83.3% | 78.7% |
| 3631439 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.65 | 50.0 | 4.52e-01 | 83.3% | 62.1% |
| 5009547 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.64 | 48.0 | 4.96e-01 | 79.2% | 89.2% |
| 3406651 | 592.7.1.1 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 | 0.64 | 49.0 | 4.88e-01 | 83.3% | 78.7% |
| 3407438 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.64 | 53.0 | 4.70e-01 | 93.1% | 65.7% |
| 4676854 | 179.1.1.1 ↗ | alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 | 0.64 | 49.0 | 4.28e-01 | 86.1% | 56.5% |
| 3266110 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.63 | 48.0 | 4.68e-01 | 83.3% | 73.8% |
| 3420661 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.63 | 48.0 | 4.56e-01 | 83.3% | 69.4% |
| 5073312 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.60 | 44.0 | 3.12e-01 | 79.2% | 24.8% |
| 3606888 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 47.0 | 4.36e-01 | 91.7% | 71.6% |
| 4947351 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.58 | 41.0 | 3.18e-01 | 76.4% | 80.0% |
| 3549772 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.58 | 48.0 | 3.74e-01 | 97.2% | 45.1% |
| 3577412 | 5054.1.1.83 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Tcp11 | 0.56 | 47.0 | 3.66e-01 | 100.0% | 88.9% |
| 3965185 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.56 | 41.0 | 4.20e-01 | 81.9% | 92.9% |
| 4984680 | 3962.1.1.1 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › HsdM_N | 0.55 | 43.0 | 3.43e-01 | 91.7% | 71.2% |
| 5057544 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.55 | 41.0 | 3.10e-01 | 84.7% | 31.1% |
| 4956322 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.55 | 40.0 | 2.97e-01 | 80.6% | 27.9% |
| 3554793 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.54 | 49.0 | 4.83e-01 | 100.0% | 96.0% |
| 4972063 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.53 | 40.0 | 2.92e-01 | 83.3% | 27.1% |
| 3777116 | 3567.1.1.93 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Tcp11 | 0.52 | 41.0 | 3.44e-01 | 83.3% | 76.7% |
| 5058742 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.52 | 42.0 | 2.59e-01 | 94.4% | 25.3% |
| 4382577 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.51 | 42.0 | 2.87e-01 | 94.4% | 62.0% |
| 3407998 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 4.12e-01 | 95.8% | 86.5% |
| 5028556 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.51 | 37.0 | 2.70e-01 | 79.2% | 24.3% |
| 3764999 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.50 | 33.0 | 3.25e-01 | 72.2% | 61.3% |