←Back to structures
gwa1_scaffold_0_prodigal-single.1__X__X__00345
Bact-Virgwa1_scaffold_0_prodigal-single.1__X__X__00345
Identity
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-72
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 45.0 | 5.14e-01 | 83.6% | 71.7% |
| 2is6A04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.80 | 54.0 | 3.91e-01 | 86.9% | 26.7% |
| 2e19A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 46.0 | 5.15e-01 | 100.0% | 78.7% |
| 1e3oC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 41.0 | 4.57e-01 | 93.4% | 68.8% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 48.0 | 4.61e-01 | 100.0% | 58.8% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 44.0 | 4.81e-01 | 100.0% | 76.6% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 45.0 | 4.31e-01 | 100.0% | 56.3% |
| 1mswD04 | 1.10.287.280 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 48.0 | 4.42e-01 | 70.5% | 94.9% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 48.0 | 4.92e-01 | 93.4% | 74.1% |
| 2ys9A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 45.0 | 4.30e-01 | 100.0% | 57.1% |
| 2da4A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 48.0 | 4.72e-01 | 100.0% | 66.7% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 41.0 | 4.59e-01 | 100.0% | 85.1% |
| 1di1A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.63 | 54.0 | 3.54e-01 | 100.0% | 34.1% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 49.0 | 4.52e-01 | 98.4% | 65.9% |
| 6l25A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.61 | 54.0 | 3.48e-01 | 95.1% | 97.6% |
| 4gewA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 39.0 | 3.75e-01 | 70.5% | 51.9% |
| 7z7vE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.61 | 43.0 | 4.38e-01 | 96.7% | 78.3% |
| 3bh1A02 | 1.20.1570.10 | Mainly Alpha › Up-down Bundle › dip2346 fold › dip2346 domain like | 0.60 | 39.0 | 3.35e-01 | 88.5% | 40.6% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 41.0 | 3.89e-01 | 75.4% | 59.5% |
| 1lliA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 35.0 | 3.10e-01 | 70.5% | 39.3% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.59 | 47.0 | 3.51e-01 | 91.8% | 45.0% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 42.0 | 3.44e-01 | 100.0% | 40.5% |
| 3vw7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 41.0 | 2.61e-01 | 75.4% | 16.3% |
| 2ebyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 38.0 | 3.57e-01 | 70.5% | 89.9% |
| 3vtfA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 40.0 | 2.76e-01 | 96.7% | 21.6% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.56 | 39.0 | 3.73e-01 | 73.8% | 70.3% |
| 2ld5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 39.0 | 3.88e-01 | 100.0% | 71.6% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.55 | 40.0 | 3.79e-01 | 93.4% | 61.0% |
| 5nx5B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 48.0 | 3.11e-01 | 100.0% | 32.2% |
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.54 | 41.0 | 3.40e-01 | 85.2% | 81.1% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.52 | 41.0 | 3.87e-01 | 91.8% | 73.4% |
| 6hxlB01 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.52 | 43.0 | 3.58e-01 | 100.0% | 79.3% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 43.0 | 3.50e-01 | 100.0% | 78.6% |
| 6k9pB02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.51 | 41.0 | 3.18e-01 | 93.4% | 80.3% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.51 | 35.0 | 3.50e-01 | 73.8% | 70.3% |
| 3lupA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 43.0 | 3.24e-01 | 95.1% | 95.5% |
| 1tuoA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.51 | 42.0 | 3.53e-01 | 100.0% | 88.0% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 41.0 | 3.99e-01 | 100.0% | 83.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3485420 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.72 | 46.0 | 4.71e-01 | 100.0% | 66.7% |
| 4945647 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.70 | 49.0 | 4.19e-01 | 100.0% | 45.0% |
| 3229130 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.68 | 45.0 | 4.83e-01 | 100.0% | 82.0% |
| 3699443 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 46.0 | 3.74e-01 | 73.8% | 39.1% |
| 3166682 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.66 | 52.0 | 4.39e-01 | 100.0% | 52.0% |
| 5044150 | 2004.1.1.188 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 | 0.63 | 49.0 | 3.40e-01 | 83.6% | 70.0% |
| 4394509 | 2004.1.1.188 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 | 0.61 | 48.0 | 3.34e-01 | 83.6% | 60.1% |
| 4971843 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.61 | 52.0 | 4.54e-01 | 91.8% | 70.8% |
| 3740448 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.61 | 42.0 | 3.88e-01 | 100.0% | 54.1% |
| 3955872 | 101.1.2.567 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF222 | 0.60 | 51.0 | 3.89e-01 | 100.0% | 39.3% |
| 3669542 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 50.0 | 3.48e-01 | 100.0% | 29.0% |
| 3986618 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.58 | 38.0 | 3.82e-01 | 100.0% | 68.3% |
| 3270160 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.57 | 48.0 | 4.06e-01 | 91.8% | 64.0% |
| 3715580 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.57 | 42.0 | 3.89e-01 | 100.0% | 58.8% |
| 5008285 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.57 | 48.0 | 3.22e-01 | 100.0% | 59.6% |
| 3595289 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 49.0 | 4.24e-01 | 100.0% | 82.1% |
| 1758960 | 101.1.1.252 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HAD_2 | 0.55 | 34.0 | 3.56e-01 | 95.1% | 67.9% |
| 3930638 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.55 | 39.0 | 3.62e-01 | 100.0% | 56.5% |
| 4600613 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 48.0 | 3.77e-01 | 100.0% | 88.5% |
| 3576710 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.53 | 43.0 | 3.92e-01 | 91.8% | 72.9% |
| 4519879 | 101.1.10.13 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF3452 | 0.51 | 44.0 | 3.17e-01 | 100.0% | 61.0% |