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gwa1_scaffold_0_prodigal-single.1__X__X__00435
Bact-Virgwa1_scaffold_0_prodigal-single.1__X__X__00435
Identity
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-76
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fghA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.70 | 52.0 | 5.52e-01 | 89.5% | 89.6% |
| 3ezqA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.65 | 57.0 | 5.02e-01 | 100.0% | 76.5% |
| 1on2A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.65 | 43.0 | 4.65e-01 | 85.5% | 82.5% |
| 7eqiA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.62 | 44.0 | 3.48e-01 | 81.6% | 36.6% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.61 | 43.0 | 3.55e-01 | 88.2% | 42.1% |
| 3khiA02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.61 | 40.0 | 3.52e-01 | 71.1% | 46.0% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.60 | 32.0 | 2.95e-01 | 84.2% | 39.4% |
| 4giwB00 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.58 | 45.0 | 3.50e-01 | 84.2% | 48.2% |
| 3cymA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 46.0 | 3.43e-01 | 89.5% | 83.6% |
| 4irlB02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 40.0 | 3.83e-01 | 75.0% | 100.0% |
| 2oebA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.56 | 49.0 | 3.90e-01 | 96.1% | 69.1% |
| 1zvuA03 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.56 | 49.0 | 3.97e-01 | 94.7% | 59.3% |
| 3vrhA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 44.0 | 2.89e-01 | 86.8% | 34.9% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 41.0 | 4.17e-01 | 85.5% | 98.7% |
| 3a2pA00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.53 | 45.0 | 2.76e-01 | 93.4% | 37.5% |
| 3nkeA00 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.53 | 44.0 | 3.36e-01 | 93.4% | 50.3% |
| 3ktdD02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.52 | 41.0 | 3.70e-01 | 88.2% | 69.7% |
| 2g5cB02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.50 | 41.0 | 3.64e-01 | 89.5% | 70.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3419147 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.70 | 59.0 | 5.55e-01 | 93.4% | 77.8% |
| 4931685 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.68 | 48.0 | 3.85e-01 | 85.5% | 39.3% |
| 5053927 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.67 | 45.0 | 3.69e-01 | 85.5% | 38.6% |
| 3952729 | 620.1.1.5 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N | 0.66 | 55.0 | 4.26e-01 | 92.1% | 46.1% |
| 5031311 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.65 | 42.0 | 4.60e-01 | 76.3% | 83.3% |
| 4955002 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.64 | 52.0 | 3.46e-01 | 86.8% | 87.9% |
| 4976669 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.63 | 52.0 | 3.41e-01 | 97.4% | 22.3% |
| 4024212 | 5086.1.1.108 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RIFIN | 0.62 | 54.0 | 3.90e-01 | 93.4% | 58.5% |
| 4026896 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.60 | 42.0 | 3.34e-01 | 96.1% | 36.1% |
| 4028763 | 4953.1.1.19 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › RIFIN | 0.60 | 51.0 | 3.93e-01 | 93.4% | 83.0% |
| 4020935 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.59 | 46.0 | 2.77e-01 | 85.5% | 44.5% |
| 3283397 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.58 | 43.0 | 3.95e-01 | 86.8% | 61.1% |
| 4445092 | 130.1.2.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 | 0.57 | 50.0 | 3.41e-01 | 98.7% | 70.9% |
| 5013300 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.54 | 47.0 | 3.80e-01 | 94.7% | 85.5% |
| 3538350 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.54 | 43.0 | 3.59e-01 | 86.8% | 73.3% |
| 3590358 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.54 | 44.0 | 3.08e-01 | 86.8% | 29.6% |
| 4242921 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 44.0 | 3.72e-01 | 93.4% | 70.8% |
| 4016568 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.51 | 46.0 | 2.85e-01 | 100.0% | 69.7% |