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gwa1_scaffold_1_prodigal-single.1__X__X__00023
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00023
Identity
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-87
Domain cluster:
rep: NC_048679.1__YP_009835553.1__HWB34_gp78__00078__D6-83
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 37.0 | 3.74e-01 | 100.0% | 50.0% |
| 2ww8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 37.0 | 3.38e-01 | 100.0% | 41.5% |
| 1wpwA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.56 | 41.0 | 2.78e-01 | 78.6% | 96.7% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 38.0 | 3.71e-01 | 100.0% | 67.4% |
| 4nxyA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 45.0 | 3.67e-01 | 98.8% | 75.0% |
| 3ozxA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 3.19e-01 | 91.7% | 52.0% |
| 2xy1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.37e-01 | 100.0% | 57.7% |
| 6bn3A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 45.0 | 3.19e-01 | 96.4% | 89.9% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 34.0 | 3.06e-01 | 100.0% | 47.9% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.51 | 33.0 | 3.09e-01 | 100.0% | 53.4% |
| 4ecnA02 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.50 | 35.0 | 3.11e-01 | 100.0% | 50.0% |
| 3op0A01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.50 | 39.0 | 3.38e-01 | 85.7% | 79.4% |
| 1ghpA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 38.0 | 2.74e-01 | 82.1% | 66.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3704667 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.63 | 44.0 | 2.93e-01 | 100.0% | 18.2% |
| 3509864 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.58 | 48.0 | 4.24e-01 | 90.5% | 80.8% |
| 3837542 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.57 | 39.0 | 3.54e-01 | 70.2% | 90.4% |
| 4147528 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.54 | 42.0 | 4.49e-01 | 97.6% | 100.0% |
| 77927 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.53 | 37.0 | 3.64e-01 | 100.0% | 66.0% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.53 | 42.0 | 4.47e-01 | 100.0% | 98.7% |
| 3657481 | 231.1.1.3 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 | 0.53 | 38.0 | 2.30e-01 | 77.4% | 44.6% |
| 3185582 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.52 | 45.0 | 2.83e-01 | 100.0% | 18.2% |
| 3626003 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.52 | 41.0 | 3.73e-01 | 85.7% | 70.4% |
| 3349141 | 375.1.1.182 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7086 | 0.52 | 38.0 | 3.21e-01 | 77.4% | 92.1% |
| 3420096 | 109.4.1.1476 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif | 0.51 | 42.0 | 2.60e-01 | 96.4% | 20.3% |
| 3679318 | 109.4.1.1992 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.50 | 41.0 | 2.57e-01 | 96.4% | 19.8% |
| 5007807 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.50 | 42.0 | 4.01e-01 | 100.0% | 80.0% |