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gwa1_scaffold_1_prodigal-single.1__X__X__00033
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00033
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-126
Domain cluster:
rep: FN667788.1__CBJ93864.1__CPT_0055__00055__D7-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01966.29 best | HD | 28.7 | 1.90e-06 | 82.5% | 50.9% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.84 | 58.0 | 6.85e-01 | 96.8% | 100.0% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.83 | 57.0 | 6.74e-01 | 97.6% | 100.0% |
| 2dqbB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.65 | 60.0 | 4.31e-01 | 100.0% | 62.2% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 39.0 | 4.26e-01 | 100.0% | 73.7% |
| 3bg2A01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.64 | 59.0 | 5.09e-01 | 99.2% | 69.3% |
| 4dmbB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.62 | 54.0 | 4.67e-01 | 93.7% | 83.2% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 34.0 | 4.08e-01 | 100.0% | 85.0% |
| 4h9nC00 | 1.20.58.2170 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 37.0 | 3.15e-01 | 82.5% | 37.1% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.59 | 38.0 | 4.24e-01 | 99.2% | 83.5% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 34.0 | 4.00e-01 | 100.0% | 84.1% |
| 3aq5A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 46.0 | 4.83e-01 | 100.0% | 90.6% |
| 4z7xB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 34.0 | 2.93e-01 | 84.9% | 34.6% |
| 1s48A04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 33.0 | 3.45e-01 | 92.9% | 62.2% |
| 7s00D01 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.56 | 36.0 | 3.67e-01 | 98.4% | 65.6% |
| 6wh0A01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.56 | 33.0 | 3.15e-01 | 90.5% | 48.0% |
| 2wcrB00 | 3.10.129.140 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein | 0.55 | 42.0 | 4.07e-01 | 81.0% | 95.2% |
| 1fxrA00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 20.0 | 2.71e-01 | 96.8% | 59.4% |
| 3o10C00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.54 | 38.0 | 3.78e-01 | 78.6% | 67.6% |
| 2y8nA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.54 | 45.0 | 2.74e-01 | 90.5% | 17.8% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.54 | 36.0 | 4.08e-01 | 80.2% | 93.3% |
| 2ja9A02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 29.0 | 3.39e-01 | 80.2% | 76.2% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.51 | 26.0 | 3.22e-01 | 85.7% | 81.7% |
| 1mg7A01 | 3.30.70.1000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like | 0.51 | 35.0 | 3.22e-01 | 91.3% | 51.4% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 45.0 | 4.29e-01 | 100.0% | 85.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4511032 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.86 | 83.0 | 6.01e-01 | 100.0% | 44.7% |
| 3291508 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.83 | 67.0 | 5.46e-01 | 99.2% | 49.3% |
| 3950512 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.81 | 77.0 | 5.54e-01 | 100.0% | 42.5% |
| 5077860 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.80 | 66.0 | 5.55e-01 | 95.2% | 54.9% |
| 3290187 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.80 | 66.0 | 5.36e-01 | 99.2% | 50.2% |
| 3960650 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.79 | 65.0 | 5.39e-01 | 99.2% | 52.7% |
| 4967136 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.77 | 72.0 | 6.02e-01 | 100.0% | 65.4% |
| 3256767 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.77 | 66.0 | 5.41e-01 | 99.2% | 52.3% |
| 5039974 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.77 | 71.0 | 5.98e-01 | 100.0% | 64.9% |
| 5069793 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.76 | 71.0 | 5.99e-01 | 100.0% | 67.5% |
| 5077285 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.75 | 71.0 | 4.79e-01 | 99.2% | 59.3% |
| 4951316 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.75 | 69.0 | 5.86e-01 | 99.2% | 66.0% |
| 5054129 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.74 | 69.0 | 5.81e-01 | 100.0% | 65.0% |
| 4551179 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.74 | 69.0 | 5.73e-01 | 100.0% | 63.8% |
| 4217922 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.73 | 68.0 | 5.64e-01 | 100.0% | 63.8% |
| 4021867 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.69 | 62.0 | 4.97e-01 | 98.4% | 52.9% |
| 3690435 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.69 | 66.0 | 5.23e-01 | 100.0% | 55.0% |
| 4932353 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.69 | 64.0 | 5.62e-01 | 100.0% | 76.1% |
| 4998970 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.68 | 63.0 | 5.67e-01 | 100.0% | 79.4% |
| 4961926 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.62 | 54.0 | 4.63e-01 | 93.7% | 84.7% |
| 3389514 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.61 | 53.0 | 4.58e-01 | 93.7% | 83.2% |
| 4022379 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 37.0 | 3.56e-01 | 81.7% | 57.3% |
| 3839604 | 592.2.1.4 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › Tipalpha | 0.55 | 42.0 | 3.97e-01 | 80.2% | 90.2% |
| 1683691 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.55 | 30.0 | 3.52e-01 | 74.6% | 75.9% |
| 4970833 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 27.0 | 3.51e-01 | 94.4% | 85.7% |
| 5035908 | 3896.1.2.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase | 0.53 | 47.0 | 4.30e-01 | 98.4% | 77.1% |
| 3615606 | 3447.1.1.1 ↗ | alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › ERG4_ERG24 | 0.51 | 44.0 | 3.86e-01 | 96.8% | 82.3% |
| 3994831 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.51 | 39.0 | 3.05e-01 | 82.5% | 56.8% |
| 3591919 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 38.0 | 2.73e-01 | 78.6% | 29.9% |
| 5063031 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.51 | 32.0 | 3.40e-01 | 72.2% | 70.9% |
| 4200968 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.50 | 31.0 | 3.66e-01 | 77.8% | 91.8% |
| 4281574 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.50 | 32.0 | 3.76e-01 | 77.8% | 100.0% |
| 4030078 | 101.1.17.29 ↗ | alpha arrays › HTH › HTH › FF domain › CLAG | 0.50 | 36.0 | 3.38e-01 | 79.4% | 60.0% |
D2
medium
residues 127-187
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i0xH00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 42.0 | 4.03e-01 | 78.7% | 69.7% |
| 3vwbA00 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 45.0 | 3.66e-01 | 83.6% | 48.3% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 50.0 | 4.68e-01 | 100.0% | 85.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3975961 | 5058.1.1.88 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_TM1 | 0.57 | 41.0 | 3.58e-01 | 78.7% | 61.0% |
| 3695214 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 47.0 | 3.55e-01 | 100.0% | 36.5% |