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gwa1_scaffold_1_prodigal-single.1__X__X__00108
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00108
Identity
- Kingdom:
- phage
Quality
80.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-144
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 34.0 | 4.21e-01 | 73.3% | 87.0% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 36.0 | 4.27e-01 | 70.7% | 89.0% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 32.0 | 4.23e-01 | 75.0% | 96.8% |
| 1fuiA03 | 3.20.14.10 | Alpha Beta › Alpha-Beta Barrel › L-fucose Isomerase; Chain A, domain 3 › L-fucose/L-arabinose isomerase, C-terminal | 0.58 | 50.0 | 3.91e-01 | 94.8% | 86.1% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 34.0 | 3.70e-01 | 82.8% | 70.8% |
| 2cxiA02 | 3.50.40.10 | Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 | 0.54 | 48.0 | 4.06e-01 | 100.0% | 78.3% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.51 | 39.0 | 3.34e-01 | 81.0% | 94.2% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.45e-01 | 71.6% | 82.6% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 37.0 | 2.74e-01 | 76.7% | 31.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4253108 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.62 | 37.0 | 4.14e-01 | 70.7% | 76.1% |
| 4932837 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.57 | 35.0 | 3.83e-01 | 75.0% | 75.6% |
| 2755606 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.56 | 39.0 | 3.12e-01 | 70.7% | 44.8% |
| 3575581 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.56 | 39.0 | 3.52e-01 | 73.3% | 64.2% |
| 3182286 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 44.0 | 3.87e-01 | 92.2% | 65.9% |
| 3230101 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.53 | 46.0 | 4.08e-01 | 95.7% | 64.7% |
| 3236373 | 1.1.5.49 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 | 0.52 | 37.0 | 2.80e-01 | 71.6% | 53.3% |
| 4400596 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.51 | 40.0 | 3.56e-01 | 81.0% | 79.4% |
| 4940648 | 10.12.1.34 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI | 0.51 | 43.0 | 3.42e-01 | 90.5% | 76.5% |