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gwa1_scaffold_1_prodigal-single.1__X__X__00141
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00141
Identity
- Kingdom:
- phage
Quality
78.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 185-274
Domain cluster:
rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00008__D242-335
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 59.0 | 5.89e-01 | 96.7% | 98.9% |
| 6hbeA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 45.0 | 4.08e-01 | 90.0% | 84.2% |
| 7wguB01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 38.0 | 3.87e-01 | 74.4% | 75.8% |
| 1q15A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 46.0 | 3.59e-01 | 96.7% | 97.1% |
| 4i1kA00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.53 | 40.0 | 3.67e-01 | 80.0% | 86.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4063416 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.69 | 48.0 | 4.25e-01 | 72.2% | 70.0% |
| 2581337 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.68 | 59.0 | 5.87e-01 | 96.7% | 97.8% |
| 3651307 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.56 | 43.0 | 3.94e-01 | 80.0% | 89.6% |
| 3646748 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.56 | 43.0 | 3.84e-01 | 80.0% | 86.7% |
| 3329328 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.55 | 42.0 | 3.78e-01 | 80.0% | 86.6% |
| 3836258 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.53 | 41.0 | 3.91e-01 | 81.1% | 98.1% |
| 3185812 | 2003.1.5.35 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM | 0.52 | 43.0 | 2.92e-01 | 95.6% | 54.9% |
D2
high
residues 290-392
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
D3
medium
residues 1-61