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gwa1_scaffold_1_prodigal-single.1__X__X__00154
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00154
Identity
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-67
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nyiA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.70 | 54.0 | 4.14e-01 | 83.3% | 48.9% |
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.69 | 51.0 | 4.20e-01 | 81.7% | 43.9% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 49.0 | 3.88e-01 | 83.3% | 39.7% |
| 3fogA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.64 | 56.0 | 4.71e-01 | 100.0% | 94.1% |
| 3d22A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.64 | 47.0 | 3.78e-01 | 81.7% | 69.8% |
| 1w4vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 42.0 | 3.58e-01 | 73.3% | 79.1% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.62 | 44.0 | 4.29e-01 | 80.0% | 70.4% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 44.0 | 3.73e-01 | 83.3% | 46.5% |
| 3dmlA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 43.0 | 3.84e-01 | 78.3% | 98.9% |
| 3hz4A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 48.0 | 3.96e-01 | 93.3% | 80.0% |
| 4fdtB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.59 | 43.0 | 2.61e-01 | 90.0% | 11.9% |
| 4h61A00 | 3.10.450.580 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 | 0.59 | 41.0 | 3.17e-01 | 73.3% | 94.2% |
| 2xf4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 40.0 | 2.75e-01 | 73.3% | 68.6% |
| 2khxA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 41.0 | 3.84e-01 | 78.3% | 67.1% |
| 4dkkA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 42.0 | 4.05e-01 | 83.3% | 75.7% |
| 4emtA02 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.57 | 45.0 | 3.48e-01 | 86.7% | 73.1% |
| 2h3gX01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 40.0 | 3.64e-01 | 76.7% | 63.6% |
| 5cflA02 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.57 | 46.0 | 3.40e-01 | 86.7% | 76.9% |
| 4i6xA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 47.0 | 3.87e-01 | 96.7% | 82.1% |
| 4l0mA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.56 | 43.0 | 2.89e-01 | 83.3% | 68.2% |
| 3rv0B03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 43.0 | 3.99e-01 | 93.3% | 64.6% |
| 4euyA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 39.0 | 3.59e-01 | 78.3% | 88.4% |
| 8gtyA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.54 | 42.0 | 3.13e-01 | 100.0% | 30.6% |
| 3f2kB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 37.0 | 2.83e-01 | 88.3% | 26.2% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 37.0 | 3.57e-01 | 78.3% | 65.2% |
| 7uqyB01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.52 | 42.0 | 3.05e-01 | 100.0% | 65.4% |
| 1fneA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.52 | 40.0 | 3.62e-01 | 83.3% | 78.5% |
| 3ly7A01 | 3.40.50.11830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 38.0 | 2.91e-01 | 83.3% | 74.5% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 34.0 | 2.91e-01 | 73.3% | 50.8% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945596 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.71 | 48.0 | 5.33e-01 | 73.3% | 93.3% |
| 3710329 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.71 | 53.0 | 4.40e-01 | 81.7% | 47.3% |
| 2524015 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.71 | 53.0 | 4.64e-01 | 80.0% | 100.0% |
| 3482603 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.70 | 50.0 | 4.23e-01 | 78.3% | 45.0% |
| 3705941 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 49.0 | 4.53e-01 | 80.0% | 67.5% |
| 3939443 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.67 | 51.0 | 4.21e-01 | 83.3% | 77.3% |
| 4888050 | 3398.1.1.1 ↗ | a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › TMEM173 | 0.66 | 46.0 | 3.61e-01 | 73.3% | 70.2% |
| 3947081 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.65 | 49.0 | 4.82e-01 | 85.0% | 75.0% |
| 4002571 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.65 | 56.0 | 4.56e-01 | 100.0% | 89.2% |
| 4442682 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.64 | 40.0 | 4.32e-01 | 71.7% | 76.0% |
| 3692756 | 2485.1.1.31 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Redoxin | 0.64 | 44.0 | 3.22e-01 | 73.3% | 77.1% |
| 3494433 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 48.0 | 3.98e-01 | 88.3% | 92.7% |
| 4537756 | 330.1.1.25 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26980 | 0.63 | 47.0 | 4.29e-01 | 83.3% | 74.1% |
| 4150972 | 2484.1.1.11 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p | 0.63 | 47.0 | 4.12e-01 | 80.0% | 67.8% |
| 4341865 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.63 | 49.0 | 5.09e-01 | 95.0% | 94.5% |
| 4043193 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.63 | 43.0 | 3.61e-01 | 73.3% | 41.8% |
| 4583884 | 296.1.1.3 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 | 0.62 | 47.0 | 3.85e-01 | 86.7% | 42.4% |
| 4929636 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 46.0 | 4.00e-01 | 81.7% | 56.0% |
| 5058109 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.62 | 45.0 | 4.05e-01 | 80.0% | 60.0% |
| 3910488 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.62 | 46.0 | 4.23e-01 | 83.3% | 76.5% |
| 3810543 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.62 | 47.0 | 3.87e-01 | 83.3% | 44.5% |
| 3564088 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 46.0 | 3.82e-01 | 81.7% | 44.5% |
| 3728854 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 46.0 | 4.55e-01 | 100.0% | 76.9% |
| 3600658 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 53.0 | 3.32e-01 | 100.0% | 25.2% |
| 3179206 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 47.0 | 4.43e-01 | 90.0% | 70.9% |
| 5066484 | 2484.1.1.333 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 | 0.60 | 47.0 | 3.27e-01 | 85.0% | 57.5% |
| 3932534 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 51.0 | 4.45e-01 | 100.0% | 98.9% |
| 3516442 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.59 | 43.0 | 3.58e-01 | 80.0% | 77.4% |
| 3439990 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.59 | 44.0 | 3.95e-01 | 86.7% | 55.6% |
| 3362766 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.59 | 41.0 | 4.38e-01 | 86.7% | 90.0% |
| 2095508 | 1170.1.2.4 ↗ | beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Gp_UL130 | 0.59 | 41.0 | 3.83e-01 | 73.3% | 62.2% |
| 5051883 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.58 | 41.0 | 4.23e-01 | 75.0% | 83.6% |
| 3502426 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.58 | 41.0 | 3.73e-01 | 76.7% | 100.0% |
| 3262262 | 1001.1.1.7 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › NDSU1_4Fe-4S | 0.57 | 33.0 | 3.28e-01 | 80.0% | 50.8% |
| 3744093 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 50.0 | 3.01e-01 | 100.0% | 16.1% |
| 4257463 | 4292.1.1.1 ↗ | a+b two layers › FlaG-like › FlaG-related › FlaG-related › FlaG | 0.56 | 42.0 | 3.96e-01 | 81.7% | 85.3% |
| 4103424 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.55 | 42.0 | 3.90e-01 | 91.7% | 63.5% |
| 3782775 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.54 | 44.0 | 3.88e-01 | 90.0% | 61.1% |
| 3573645 | 7556.1.1.1 ↗ | a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C | 0.53 | 40.0 | 2.60e-01 | 80.0% | 57.6% |
| 4520401 | 2.14.1.1 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC | 0.52 | 40.0 | 3.55e-01 | 90.0% | 66.3% |
| 5059383 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 37.0 | 3.47e-01 | 81.7% | 96.2% |
| 3715091 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.51 | 38.0 | 3.76e-01 | 80.0% | 76.9% |
| 3236050 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.51 | 41.0 | 3.52e-01 | 98.3% | 80.9% |
| 5021368 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.51 | 43.0 | 2.68e-01 | 93.3% | 38.4% |
| 3987842 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 38.0 | 2.53e-01 | 80.0% | 63.0% |
| 3804439 | 2.1.1.23 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 | 0.50 | 42.0 | 3.25e-01 | 100.0% | 62.0% |