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gwa1_scaffold_1_prodigal-single.1__X__X__00158
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00158
Identity
- Kingdom:
- phage
Quality
95.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-42
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.79 | 61.0 | 4.52e-01 | 89.7% | 32.7% |
| 7ahbB01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.76 | 66.0 | 5.82e-01 | 100.0% | 98.3% |
| 3tzyA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.75 | 65.0 | 5.39e-01 | 100.0% | 82.9% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.74 | 63.0 | 5.37e-01 | 100.0% | 88.1% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.72 | 59.0 | 3.96e-01 | 100.0% | 43.1% |
| 7agpA01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.71 | 59.0 | 5.20e-01 | 100.0% | 98.4% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.70 | 53.0 | 4.88e-01 | 87.2% | 98.2% |
| 1zczA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.70 | 59.0 | 4.26e-01 | 100.0% | 35.9% |
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.70 | 57.0 | 4.98e-01 | 100.0% | 98.5% |
| 3g8qA01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.69 | 60.0 | 4.32e-01 | 100.0% | 34.5% |
| 3cvzB01 | 3.30.1490.290 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 | 0.69 | 55.0 | 4.32e-01 | 100.0% | 54.5% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.69 | 57.0 | 4.02e-01 | 100.0% | 31.9% |
| 2hpuA02 | 3.30.70.2050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 57.0 | 4.89e-01 | 100.0% | 58.7% |
| 2diyA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.68 | 50.0 | 3.74e-01 | 89.7% | 29.7% |
| 1pqsA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.68 | 51.0 | 4.33e-01 | 100.0% | 46.8% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.68 | 53.0 | 4.26e-01 | 100.0% | 52.1% |
| 1ollA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 58.0 | 4.37e-01 | 100.0% | 47.4% |
| 2vsdA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 58.0 | 4.35e-01 | 100.0% | 46.2% |
| 6grqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 56.0 | 4.33e-01 | 100.0% | 50.0% |
| 1zxqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 56.0 | 4.07e-01 | 100.0% | 44.9% |
| 1qhdA01 | 2.60.120.170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 47.0 | 3.15e-01 | 100.0% | 18.8% |
| 4ehiA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.64 | 53.0 | 3.61e-01 | 100.0% | 26.9% |
| 4eskC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 55.0 | 4.10e-01 | 100.0% | 43.9% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.63 | 49.0 | 4.27e-01 | 100.0% | 56.9% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 53.0 | 3.68e-01 | 100.0% | 38.0% |
| 2vecA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 52.0 | 3.88e-01 | 100.0% | 46.6% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 50.0 | 4.35e-01 | 97.4% | 98.4% |
| 2ckwA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 48.0 | 3.59e-01 | 100.0% | 77.6% |
| 3n0aA02 | 2.60.40.1110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 50.0 | 3.48e-01 | 100.0% | 35.6% |
| 1k92A02 | 3.90.1260.10 | Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 | 0.58 | 51.0 | 3.17e-01 | 100.0% | 26.5% |
| 6x3aA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 48.0 | 3.65e-01 | 100.0% | 51.9% |
| 6ezmA01 | 3.30.230.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 | 0.58 | 44.0 | 3.33e-01 | 84.6% | 29.6% |
| 4f3jA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 47.0 | 3.29e-01 | 100.0% | 32.2% |
| 1xl7A02 | 3.30.559.70 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 | 0.57 | 47.0 | 2.82e-01 | 100.0% | 66.3% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 3.44e-01 | 92.3% | 51.5% |
| 1g6gB00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 44.0 | 3.28e-01 | 100.0% | 93.5% |
| 4gb7A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 45.0 | 2.68e-01 | 100.0% | 40.5% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 46.0 | 3.23e-01 | 100.0% | 38.0% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 3.46e-01 | 94.9% | 62.2% |
| 5x6vF00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 41.0 | 3.10e-01 | 92.3% | 37.3% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 36.0 | 2.95e-01 | 89.7% | 33.6% |
| 3mdnD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 40.0 | 2.66e-01 | 100.0% | 18.4% |
| 2hjeA02 | 2.20.20.100 | Mainly Beta › Single Sheet › Anthopleurin-A › LuxQ periplasmic domain, C-terminal subdomain | 0.52 | 44.0 | 4.04e-01 | 100.0% | 92.6% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3974805 | 2498.1.1.71 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Aminopep | 0.92 | 83.0 | 4.75e-01 | 100.0% | 15.7% |
| 4952123 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.87 | 76.0 | 6.62e-01 | 100.0% | 65.0% |
| 3942306 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.84 | 72.0 | 4.50e-01 | 100.0% | 19.0% |
| 3510118 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.80 | 69.0 | 6.07e-01 | 100.0% | 67.3% |
| 4965210 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.78 | 66.0 | 5.82e-01 | 100.0% | 86.7% |
| 4996266 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.76 | 66.0 | 5.50e-01 | 100.0% | 95.7% |
| 4538961 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.76 | 65.0 | 5.25e-01 | 97.4% | 100.0% |
| 5034652 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.73 | 61.0 | 5.20e-01 | 100.0% | 91.4% |
| 4929482 | 3769.1.1.0 ↗ | 0.72 | 50.0 | 4.84e-01 | 100.0% | 64.4% | |
| 1002416 | 2492.1.1.5 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas | 0.70 | 59.0 | 3.94e-01 | 100.0% | 25.8% |
| 3228425 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 58.0 | 4.28e-01 | 100.0% | 82.7% |
| 1031012 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.69 | 56.0 | 3.93e-01 | 100.0% | 29.9% |
| 4186857 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.67 | 52.0 | 5.21e-01 | 100.0% | 92.5% |
| 4531584 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.67 | 56.0 | 5.59e-01 | 100.0% | 92.5% |
| 5062356 | 2492.1.1.5 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas | 0.67 | 55.0 | 3.52e-01 | 100.0% | 19.5% |
| 4985746 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.67 | 48.0 | 3.73e-01 | 89.7% | 32.4% |
| 3511752 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.66 | 52.0 | 4.29e-01 | 100.0% | 75.3% |
| 4072109 | 2492.1.1.5 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas | 0.66 | 55.0 | 3.78e-01 | 100.0% | 27.1% |
| 3924084 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 54.0 | 4.12e-01 | 100.0% | 97.0% |
| 5005708 | 3755.3.1.127 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N | 0.64 | 49.0 | 3.19e-01 | 87.2% | 26.1% |
| 4211631 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 46.0 | 4.34e-01 | 79.5% | 100.0% |
| 3898227 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.64 | 50.0 | 3.29e-01 | 87.2% | 51.5% |
| 3484879 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.61 | 47.0 | 4.51e-01 | 100.0% | 74.0% |
| 3987138 | 253.1.1.1 ↗ | a+b complex topology › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Arginosuc_syn_C | 0.60 | 53.0 | 3.21e-01 | 100.0% | 21.9% |
| 5018703 | 815.1.1.0 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 | 0.60 | 49.0 | 3.92e-01 | 100.0% | 56.7% |
| 3881786 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.59 | 49.0 | 3.74e-01 | 100.0% | 42.0% |
| 3237567 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 53.0 | 4.71e-01 | 100.0% | 70.9% |
| 4153905 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.57 | 42.0 | 3.39e-01 | 89.7% | 37.2% |
| 3603559 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.57 | 41.0 | 3.29e-01 | 92.3% | 36.4% |
| 3689809 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 42.0 | 4.18e-01 | 100.0% | 84.4% |
| 5050426 | 223.2.1.12 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int | 0.52 | 38.0 | 2.92e-01 | 89.7% | 28.8% |
| 3244813 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.51 | 39.0 | 2.86e-01 | 94.9% | 59.3% |