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gwa1_scaffold_1_prodigal-single.1__X__X__00209

Bact-Vir

gwa1_scaffold_1_prodigal-single.1__X__X__00209

Identity

Kingdom:
phage

Quality

69.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 63-198
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13589.13 best HATPase_c_3 27.5 3.80e-06 73.5% 61.3%
D2 high residues 494-587
PDB
D3 high residues 591-666
PDB
D4 medium residues 206-280
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z5bB03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.65 56.0 4.54e-01 100.0% 77.9%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.62 54.0 4.24e-01 100.0% 57.0%
1b25A01 3.60.9.10 Alpha Beta › 4-Layer Sandwich › Aldehyde Ferredoxin Oxidoreductase; A, domain 1 › Aldehyde ferredoxin oxidoreductase, N-terminal domain 0.59 40.0 3.00e-01 72.0% 91.9%
2gq0B01 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.58 51.0 3.96e-01 100.0% 55.0%
2vpkA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.58 42.0 3.75e-01 80.0% 68.7%
2pq8A01 3.30.60.60 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › N-acetyl transferase-like 0.57 31.0 3.51e-01 78.7% 69.1%
8gq6B01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.56 40.0 3.43e-01 77.3% 61.4%
1ow1A00 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.56 40.0 3.18e-01 77.3% 90.4%
1nztA01 3.30.230.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › lpxc deacetylase, domain 1 0.55 47.0 4.09e-01 97.3% 79.0%
3ga1A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.55 40.0 3.57e-01 80.0% 69.9%
4a9aA01 6.10.140.1070 Special › Helix non-globular › Helix Hairpins › 0.54 37.0 3.29e-01 90.7% 46.8%
1kkhA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 45.0 3.46e-01 93.3% 87.3%
4hxiA01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.54 39.0 3.55e-01 78.7% 73.2%
3m5bA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.54 40.0 3.60e-01 81.3% 67.0%
7phiA01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.53 39.0 3.46e-01 77.3% 80.0%
1pieA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 45.0 3.38e-01 100.0% 58.8%
1y6zA01 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 46.0 3.66e-01 100.0% 53.8%
3hqiA02 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.52 38.0 3.21e-01 80.0% 54.3%
5bxhA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 37.0 3.48e-01 80.0% 81.2%
2ppiA01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 37.0 3.39e-01 80.0% 72.2%
3k85A00 3.30.230.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 43.0 2.89e-01 94.7% 39.5%
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.50 36.0 3.25e-01 76.0% 81.7%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3246869 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.68 59.0 4.20e-01 100.0% 70.4%
5044842 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.67 58.0 4.24e-01 100.0% 55.0%
3282393 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.67 60.0 4.83e-01 100.0% 60.0%
1549467 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.67 59.0 4.80e-01 100.0% 64.6%
2323907 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.67 58.0 4.20e-01 100.0% 75.3%
3557551 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.67 58.0 4.92e-01 100.0% 70.0%
4935743 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.67 58.0 4.95e-01 100.0% 88.0%
3869716 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.66 58.0 4.70e-01 100.0% 64.7%
5027858 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.66 58.0 5.02e-01 100.0% 85.8%
3487862 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.66 57.0 4.08e-01 100.0% 71.7%
4632895 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.66 57.0 4.91e-01 100.0% 88.0%
3968852 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.66 58.0 4.67e-01 100.0% 63.3%
4928985 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.66 56.0 4.60e-01 100.0% 78.7%
4966371 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 56.0 3.80e-01 100.0% 38.7%
4584919 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.65 56.0 4.21e-01 100.0% 59.0%
4424690 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.65 56.0 4.67e-01 100.0% 72.1%
4094312 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.65 57.0 4.56e-01 100.0% 67.1%
4160946 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.65 56.0 5.02e-01 100.0% 84.5%
5057422 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.64 55.0 4.25e-01 98.7% 82.2%
3310887 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.64 56.0 4.79e-01 100.0% 75.2%
2123278 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.64 55.0 4.41e-01 100.0% 64.0%
4026123 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.64 56.0 4.56e-01 100.0% 75.9%
4059442 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.63 55.0 4.66e-01 100.0% 83.8%
4026555 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.63 54.0 4.69e-01 100.0% 85.6%
3929150 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.63 47.0 3.63e-01 81.3% 44.9%
3596948 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.62 54.0 4.49e-01 100.0% 73.6%
4012676 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.62 54.0 4.76e-01 100.0% 89.6%
3830910 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.62 53.0 4.71e-01 98.7% 88.7%
4036592 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.62 53.0 4.90e-01 100.0% 88.0%
3416669 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.61 45.0 4.07e-01 80.0% 73.3%
3993136 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 43.0 3.04e-01 77.3% 32.9%
4679195 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.60 51.0 4.47e-01 100.0% 87.5%
3784150 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.59 52.0 4.56e-01 100.0% 86.1%
3412904 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.59 43.0 3.63e-01 77.3% 63.1%
3755342 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.59 42.0 3.45e-01 77.3% 58.0%
3370077 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.59 42.0 3.44e-01 77.3% 55.3%
3446445 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.58 43.0 3.60e-01 80.0% 73.3%
3213536 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.58 42.0 3.51e-01 77.3% 61.5%
3407351 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.58 43.0 3.92e-01 81.3% 73.3%
3876705 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.56 41.0 3.36e-01 78.7% 68.5%
3906891 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.56 40.0 3.52e-01 76.0% 75.7%
3214086 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.56 40.0 2.86e-01 77.3% 31.2%
4874125 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.56 40.0 3.39e-01 77.3% 61.5%
3218829 226.1.1.4 a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.55 40.0 3.48e-01 78.7% 80.8%
4937711 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 38.0 2.60e-01 90.7% 19.3%
3244003 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 39.0 3.10e-01 80.0% 45.6%
3183936 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 39.0 3.31e-01 77.3% 74.1%
3998502 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 37.0 3.63e-01 70.7% 73.8%
4947798 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.54 43.0 3.46e-01 93.3% 64.7%
3237637 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 39.0 3.62e-01 80.0% 77.0%
5001215 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.53 42.0 3.34e-01 90.7% 40.6%
3744140 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 38.0 3.08e-01 80.0% 50.0%
4587778 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.53 36.0 3.16e-01 72.0% 75.2%
5055823 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.53 44.0 3.38e-01 96.0% 54.1%
3557966 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.52 39.0 3.39e-01 81.3% 60.8%
4977874 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.50 42.0 3.29e-01 96.0% 64.0%
5036176 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 34.0 2.69e-01 92.0% 30.6%
D5 medium residues 340-442
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b70A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.56 41.0 3.49e-01 76.7% 76.6%
3u7eB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 42.0 3.44e-01 87.4% 84.2%
3lufB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 36.0 3.43e-01 71.8% 93.7%
3qwbA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 38.0 3.20e-01 79.6% 81.6%
3l84A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.51 39.0 2.87e-01 83.5% 72.9%
1gpuA02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.51 42.0 3.36e-01 91.3% 88.2%
5zxnA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.50 39.0 3.37e-01 81.6% 77.2%
1bgwA02 3.40.50.670 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 44.0 3.80e-01 100.0% 82.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3289686 3703.1.1.0 a/b three-layered sandwiches › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain 0.59 43.0 4.44e-01 97.1% 83.2%
3508907 7579.1.1.2 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase 0.55 48.0 3.39e-01 94.2% 74.3%
4035744 6020.1.1.1 a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.55 38.0 3.50e-01 97.1% 55.4%
4949915 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.54 39.0 3.40e-01 75.7% 83.7%
4235681 2004.1.1.105 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase 0.52 42.0 3.61e-01 86.4% 73.9%
4291338 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.51 35.0 3.20e-01 70.9% 81.4%
4475355 2004.1.1.105 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase 0.50 40.0 3.47e-01 86.4% 74.5%
3778818 11.1.1.1081 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set, Ig_2 0.50 38.0 2.56e-01 96.1% 20.0%