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gwa1_scaffold_1_prodigal-single.1__X__X__00229
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00229
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-106
Domain cluster:
rep: IMGVR_UViG_3300025770_000022-3300025770-Ga0209362_100018334__D18-112
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mnfA00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.66 | 51.0 | 3.88e-01 | 80.8% | 80.9% |
| 7n0eB02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.65 | 37.0 | 3.55e-01 | 82.7% | 47.5% |
| 5ijaA00 | 3.40.50.1450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like | 0.64 | 49.0 | 4.38e-01 | 81.7% | 90.5% |
| 2k7bA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.62 | 43.0 | 4.82e-01 | 99.0% | 96.1% |
| 2p90A01 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.62 | 47.0 | 3.72e-01 | 80.8% | 84.8% |
| 3e35A01 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.62 | 47.0 | 3.67e-01 | 79.8% | 81.3% |
| 1lmlA01 | 3.10.170.20 | Alpha Beta › Roll › Elastase; domain 1 › | 0.61 | 47.0 | 4.00e-01 | 80.8% | 69.4% |
| 3e11A00 | 3.30.2010.20 | Alpha Beta › 2-Layer Sandwich › Zincin-like › | 0.61 | 48.0 | 4.69e-01 | 84.6% | 87.7% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.60 | 46.0 | 3.83e-01 | 81.7% | 83.9% |
| 1rybA00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.60 | 46.0 | 3.81e-01 | 81.7% | 88.7% |
| 4ipeB04 | 1.20.120.790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Heat shock protein 90, C-terminal domain | 0.59 | 46.0 | 4.32e-01 | 81.7% | 75.4% |
| 4qt4A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.58 | 45.0 | 3.69e-01 | 82.7% | 91.0% |
| 1cfzA00 | 3.40.50.1450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like | 0.58 | 44.0 | 3.88e-01 | 82.7% | 85.2% |
| 2z5bB01 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 32.0 | 3.09e-01 | 82.7% | 47.9% |
| 1dmuA00 | 3.40.600.20 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI | 0.56 | 49.0 | 3.59e-01 | 100.0% | 86.6% |
| 1zelA01 | 3.90.56.20 | Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › replication protein C, winged helix domain | 0.55 | 34.0 | 3.57e-01 | 85.6% | 66.3% |
| 3wp4A00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.53 | 45.0 | 3.61e-01 | 98.1% | 53.5% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 4.01e-01 | 96.2% | 81.6% |
| 3vl9B00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.52 | 45.0 | 3.59e-01 | 98.1% | 52.5% |
| 2bw8A00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.52 | 45.0 | 3.55e-01 | 98.1% | 50.9% |
| 1m4wA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.52 | 43.0 | 3.59e-01 | 94.2% | 55.8% |
| 1bjxA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 34.0 | 3.40e-01 | 82.7% | 63.6% |
| 4h0oA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 33.0 | 2.87e-01 | 100.0% | 38.2% |
| 4ol8B03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.51 | 34.0 | 3.56e-01 | 100.0% | 76.7% |
| 1nlrA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.51 | 43.0 | 3.48e-01 | 97.1% | 50.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947938 | 2011.2.1.21 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF1512_C | 0.65 | 50.0 | 4.20e-01 | 81.7% | 88.9% |
| 4104734 | 2011.2.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro | 0.65 | 50.0 | 4.17e-01 | 81.7% | 88.3% |
| 4967773 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.64 | 50.0 | 4.29e-01 | 81.7% | 88.7% |
| 4992252 | 2011.2.1.21 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF1512_C | 0.64 | 49.0 | 4.22e-01 | 82.7% | 91.8% |
| 1840629 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.64 | 49.0 | 4.38e-01 | 81.7% | 90.5% |
| 5043481 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.64 | 49.0 | 4.25e-01 | 81.7% | 88.7% |
| 4955006 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.62 | 48.0 | 4.45e-01 | 81.7% | 96.9% |
| 11497 | 2498.1.1.32 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Zincin_1 | 0.61 | 48.0 | 4.70e-01 | 84.6% | 88.5% |
| 4998045 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.61 | 47.0 | 4.04e-01 | 81.7% | 84.8% |
| 5006656 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.61 | 46.0 | 4.09e-01 | 81.7% | 84.5% |
| 4985903 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.60 | 46.0 | 4.04e-01 | 81.7% | 88.1% |
| 3369911 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 38.0 | 4.04e-01 | 86.5% | 72.2% |
| 3437866 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 37.0 | 3.88e-01 | 86.5% | 67.4% |
| 4984537 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.57 | 43.0 | 3.85e-01 | 82.7% | 91.0% |
| 3507568 | 207.1.1.218 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27086 | 0.56 | 35.0 | 3.04e-01 | 92.3% | 39.4% |
| 4958442 | 2008.1.1.51 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › McrBC | 0.55 | 41.0 | 3.50e-01 | 79.8% | 96.6% |
| 4028668 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 32.0 | 3.98e-01 | 84.6% | 96.9% |
| 5036025 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.53 | 47.0 | 4.12e-01 | 99.0% | 96.2% |
| 3392391 | 101.1.2.397 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 | 0.52 | 34.0 | 3.89e-01 | 85.6% | 92.0% |
| 3188387 | 10.1.1.7 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_11 | 0.52 | 44.0 | 3.63e-01 | 94.2% | 58.5% |
| 4960779 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.52 | 46.0 | 4.07e-01 | 99.0% | 96.8% |
| 5066649 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.52 | 46.0 | 3.99e-01 | 99.0% | 91.5% |
| 3958979 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.51 | 30.0 | 2.62e-01 | 82.7% | 36.4% |
| 4970784 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.51 | 43.0 | 3.77e-01 | 95.2% | 90.3% |
| 3830447 | 101.1.2.397 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 | 0.51 | 34.0 | 3.72e-01 | 85.6% | 87.5% |
| 4992303 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.51 | 44.0 | 3.83e-01 | 99.0% | 85.9% |
| 3735362 | 7516.1.1.79 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 | 0.50 | 44.0 | 2.84e-01 | 100.0% | 25.2% |
| 3508000 | 101.1.2.466 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C | 0.50 | 31.0 | 3.77e-01 | 81.7% | 100.0% |
D2
high
residues 115-208
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.66 | 48.0 | 5.01e-01 | 98.9% | 85.5% |
| 2rfbA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.62 | 55.0 | 3.82e-01 | 100.0% | 63.9% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.60 | 38.0 | 4.14e-01 | 75.5% | 76.9% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.60 | 44.0 | 4.51e-01 | 79.8% | 80.4% |
| 4i8oA04 | 6.10.250.2650 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 36.0 | 3.59e-01 | 79.8% | 60.2% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 32.0 | 3.28e-01 | 73.4% | 59.8% |
| 5nx5B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 45.0 | 3.36e-01 | 100.0% | 49.0% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.54 | 40.0 | 4.32e-01 | 79.8% | 93.6% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.53 | 44.0 | 3.21e-01 | 92.6% | 58.1% |
| 3bvxA02 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.52 | 31.0 | 2.99e-01 | 89.4% | 48.6% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 39.0 | 4.05e-01 | 93.6% | 85.2% |
| 1s0pA01 | 1.25.40.330 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Adenylate cyclase-associated CAP, N-terminal domain | 0.51 | 44.0 | 3.72e-01 | 100.0% | 97.1% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 38.0 | 3.92e-01 | 93.6% | 83.9% |
| 1x46A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 37.0 | 3.25e-01 | 78.7% | 90.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4460903 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.66 | 47.0 | 4.80e-01 | 74.5% | 77.8% |
| 3237792 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.65 | 45.0 | 4.92e-01 | 86.2% | 89.3% |
| 4680590 | 2.21.1.4 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SSO2105_N | 0.60 | 44.0 | 3.57e-01 | 92.6% | 37.9% |
| 3507547 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.59 | 42.0 | 4.72e-01 | 74.5% | 100.0% |
| 3185992 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.59 | 35.0 | 3.18e-01 | 73.4% | 41.5% |
| 3224363 | 3831.1.1.0 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 | 0.56 | 32.0 | 3.38e-01 | 92.6% | 61.2% |
| 3701095 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.55 | 39.0 | 3.42e-01 | 74.5% | 93.8% |
| 3264196 | 5067.1.1.13 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ALMT | 0.55 | 49.0 | 4.08e-01 | 100.0% | 83.0% |
| 1034372 | 109.4.1.20 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR | 0.54 | 38.0 | 4.17e-01 | 86.2% | 91.9% |
| 3618836 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 44.0 | 3.19e-01 | 89.4% | 59.6% |
| 3672184 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.54 | 41.0 | 4.46e-01 | 81.9% | 95.0% |
| 53647 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.52 | 31.0 | 3.00e-01 | 90.4% | 49.5% |
| 3909938 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.52 | 37.0 | 3.82e-01 | 75.5% | 94.4% |
| 4485361 | 5050.1.1.25 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TLC | 0.51 | 39.0 | 2.90e-01 | 85.1% | 86.4% |