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gwa1_scaffold_1_prodigal-single.1__X__X__00231
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00231
Identity
- Kingdom:
- phage
Quality
87.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-132
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qwnD01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.71 | 39.0 | 4.21e-01 | 100.0% | 64.3% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 50.0 | 4.86e-01 | 100.0% | 77.9% |
| 4bfeA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 46.0 | 4.66e-01 | 100.0% | 81.5% |
| 4lfhD02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 45.0 | 4.58e-01 | 100.0% | 80.0% |
| 3uxfA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 49.0 | 4.02e-01 | 100.0% | 57.2% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 4.28e-01 | 100.0% | 80.0% |
| 7plsA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 42.0 | 4.09e-01 | 100.0% | 73.1% |
| 4fomA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 4.30e-01 | 100.0% | 77.8% |
| 3efoB03 | 2.60.40.1670 | Mainly Beta › Sandwich › Immunoglobulin-like › beta-sandwich domain of Sec23/24 | 0.55 | 47.0 | 4.08e-01 | 98.8% | 81.8% |
| 1i82A00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 47.0 | 3.71e-01 | 100.0% | 59.8% |
| 6efyA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 4.23e-01 | 100.0% | 79.6% |
| 2wyhA05 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 47.0 | 4.07e-01 | 100.0% | 83.6% |
| 1fp5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 45.0 | 4.36e-01 | 100.0% | 83.0% |
| 8shiI01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 4.12e-01 | 94.0% | 76.9% |
| 3fsyB01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.39e-01 | 100.0% | 57.4% |
| 4pjeE01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 4.21e-01 | 100.0% | 79.6% |
| 1m2vB02 | 2.60.40.1670 | Mainly Beta › Sandwich › Immunoglobulin-like › beta-sandwich domain of Sec23/24 | 0.52 | 43.0 | 3.61e-01 | 97.6% | 75.0% |
| 2oznA00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.77e-01 | 100.0% | 77.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 998700 | 2.18.1.1 ↗ | beta barrels › OB-fold › OB domain in putative lipoprotein BF3042-related proteins › OB domain in putative lipoprotein BF3042-related proteins › NigD_N | 0.70 | 38.0 | 4.04e-01 | 100.0% | 60.0% |
| 5010242 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.58 | 50.0 | 3.99e-01 | 100.0% | 75.7% |
| 3921785 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 45.0 | 4.36e-01 | 100.0% | 76.8% |
| 5079573 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 48.0 | 4.05e-01 | 100.0% | 55.5% |
| 3260358 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 45.0 | 4.47e-01 | 100.0% | 85.6% |
| 3976897 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 45.0 | 3.98e-01 | 90.5% | 97.6% |
| 5048755 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.55 | 47.0 | 3.56e-01 | 100.0% | 57.0% |
| 4210084 | 394.1.1.3 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › DUF5401 | 0.55 | 33.0 | 3.74e-01 | 83.3% | 86.2% |
| 3942564 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.55 | 38.0 | 2.77e-01 | 73.8% | 80.8% |
| 3183631 | 11.1.5.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS | 0.53 | 45.0 | 3.61e-01 | 98.8% | 57.2% |
| 3897495 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 44.0 | 3.96e-01 | 100.0% | 65.4% |
| 3670395 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 39.0 | 3.99e-01 | 81.0% | 87.5% |
| 4418638 | 10.12.1.107 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 | 0.51 | 44.0 | 3.12e-01 | 98.8% | 81.8% |
| 3580730 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 40.0 | 3.34e-01 | 91.7% | 90.6% |
| 3408645 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.50 | 42.0 | 4.04e-01 | 100.0% | 81.9% |
D2
medium
residues 1-43_138-184
Domain cluster:
rep: MT028491.1__QIG65719.1__phiOC_p053__00053__DFULL
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05488.19 best | PAAR_motif | 34.3 | 2.80e-08 | 82.2% | 94.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ku0D00 | 2.60.200.60 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.89 | 84.0 | 8.23e-01 | 98.9% | 100.0% |
| 4jivD00 | 2.60.200.60 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.88 | 83.0 | 8.23e-01 | 98.9% | 100.0% |
| 2f8xC02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.61 | 51.0 | 4.23e-01 | 91.1% | 99.4% |
| 6klsA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.55 | 35.0 | 3.52e-01 | 96.7% | 61.7% |
| 1m9uA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 40.0 | 3.55e-01 | 81.1% | 98.5% |
| 4c0dC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.52 | 33.0 | 2.85e-01 | 86.7% | 40.1% |
| 4aq1A05 | 2.60.40.3460 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.72e-01 | 84.4% | 93.6% |
| 2avwD01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 42.0 | 3.67e-01 | 92.2% | 69.5% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 34.0 | 3.80e-01 | 91.1% | 94.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5056459 | 3174.3.1.1 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif | 0.93 | 65.0 | 7.70e-01 | 78.9% | 100.0% |
| 3949323 | 3174.3.1.1 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif | 0.91 | 81.0 | 8.38e-01 | 96.7% | 98.8% |
| 3966552 | 3174.3.1.1 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif | 0.91 | 87.0 | 8.17e-01 | 100.0% | 94.3% |
| 3948150 | 3174.3.1.1 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif | 0.90 | 77.0 | 8.17e-01 | 95.6% | 100.0% |
| 5059112 | 3174.3.1.1 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif | 0.89 | 82.0 | 8.09e-01 | 95.6% | 100.0% |
| 1292784 | 3174.3.1.1 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif | 0.89 | 84.0 | 8.23e-01 | 98.9% | 100.0% |
| 4957571 | 3174.3.1.1 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif | 0.89 | 84.0 | 7.25e-01 | 98.9% | 99.2% |
| 2631812 | 3174.3.1.0 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein | 0.88 | 80.0 | 8.19e-01 | 98.9% | 98.9% |
| 1088866 | 3174.3.1.1 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif | 0.88 | 83.0 | 8.23e-01 | 98.9% | 100.0% |
| 4995813 | 3174.3.1.1 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif | 0.87 | 81.0 | 8.16e-01 | 100.0% | 98.9% |
| 4890674 | 3174.3.1.0 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein | 0.86 | 79.0 | 7.90e-01 | 97.8% | 100.0% |
| 3970456 | 3174.3.1.2 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › DUF4280 | 0.84 | 78.0 | 6.79e-01 | 98.9% | 99.2% |
| 4656513 | 3174.3.1.1 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif | 0.82 | 72.0 | 7.11e-01 | 93.3% | 100.0% |
| 3972966 | 3174.3.1.0 ↗ | beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein | 0.78 | 70.0 | 5.97e-01 | 97.8% | 97.9% |
| 4947109 | 3174.1.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_L14 | 0.58 | 46.0 | 4.01e-01 | 85.6% | 76.3% |
| 5040856 | 3174.1.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_L14 | 0.56 | 45.0 | 4.01e-01 | 86.7% | 79.2% |
| 4014306 | 3174.1.1.0 ↗ | beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related | 0.56 | 44.0 | 3.88e-01 | 86.7% | 74.1% |
| 5069557 | 3174.1.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_L14 | 0.55 | 44.0 | 3.96e-01 | 87.8% | 80.0% |
| 3517415 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.52 | 36.0 | 4.07e-01 | 93.3% | 98.5% |
| 3837860 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.51 | 35.0 | 3.15e-01 | 95.6% | 49.2% |
| 3530591 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.50 | 36.0 | 3.27e-01 | 91.1% | 54.4% |