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gwa1_scaffold_1_prodigal-single.1__X__X__00250
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00250
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-51_217-367
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19782.5 best | DUF6267 | 45.4 | 1.00e-11 | 85.3% | 44.7% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2uuiA00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.70 | 34.0 | 3.75e-01 | 80.4% | 54.8% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.63 | 33.0 | 4.16e-01 | 90.2% | 83.6% |
| 3pmcA00 | 1.10.490.70 | Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain | 0.62 | 35.0 | 4.09e-01 | 96.2% | 76.5% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.62 | 38.0 | 4.08e-01 | 92.9% | 70.3% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.61 | 36.0 | 4.31e-01 | 92.4% | 87.5% |
| 2w31A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 35.0 | 3.89e-01 | 96.7% | 69.7% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.60 | 33.0 | 3.64e-01 | 90.2% | 65.0% |
| 2x0cA01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.60 | 30.0 | 3.09e-01 | 76.1% | 48.9% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.58 | 32.0 | 3.87e-01 | 90.8% | 81.9% |
| 3ajmB02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.58 | 33.0 | 3.92e-01 | 78.3% | 78.9% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.58 | 28.0 | 3.54e-01 | 96.2% | 74.8% |
| 2zs0A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 32.0 | 3.63e-01 | 78.3% | 70.7% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.56 | 28.0 | 3.46e-01 | 98.9% | 75.0% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.56 | 29.0 | 3.93e-01 | 77.7% | 94.8% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 36.0 | 4.22e-01 | 80.4% | 95.4% |
| 1yjgA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.52 | 38.0 | 4.04e-01 | 83.7% | 86.6% |
| 1qkrB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 38.0 | 3.84e-01 | 99.5% | 75.6% |
| 6k6iA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 31.0 | 2.96e-01 | 94.0% | 47.9% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588718 | 633.19.1.0 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain | 0.70 | 30.0 | 4.46e-01 | 74.5% | 94.7% |
| 3424173 | 601.1.2.74 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Rx_N | 0.61 | 34.0 | 3.69e-01 | 78.3% | 63.9% |
| 4550741 | 106.1.1.7 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Protoglobin | 0.59 | 38.0 | 3.95e-01 | 96.7% | 68.2% |
| 4213065 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.58 | 36.0 | 3.88e-01 | 92.4% | 70.0% |
| 3732232 | 109.3.1.293 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ran-binding | 0.58 | 33.0 | 3.58e-01 | 78.8% | 63.9% |
| 3932573 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.57 | 36.0 | 4.09e-01 | 92.9% | 82.1% |
| 3255242 | 601.1.2.4 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4 | 0.57 | 35.0 | 3.70e-01 | 92.9% | 67.5% |
| 3623633 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.55 | 35.0 | 3.92e-01 | 92.4% | 80.0% |
| 3604551 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.55 | 35.0 | 3.61e-01 | 96.2% | 67.1% |
| 3926062 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 34.0 | 3.50e-01 | 92.4% | 63.3% |
| 3937142 | 601.54.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 | 0.54 | 35.0 | 3.64e-01 | 92.9% | 69.4% |
| 3614441 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.53 | 34.0 | 3.68e-01 | 92.9% | 72.5% |
| 3913809 | 150.1.1.101 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › MARVEL | 0.52 | 34.0 | 3.70e-01 | 92.4% | 79.3% |
| 3969777 | 601.1.1.89 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › FUSC | 0.52 | 40.0 | 4.22e-01 | 80.4% | 94.4% |
| 3924136 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 34.0 | 3.69e-01 | 93.5% | 78.1% |
| 3999007 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 35.0 | 3.78e-01 | 92.4% | 81.3% |
| 3219759 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.51 | 32.0 | 3.72e-01 | 92.4% | 85.2% |
| 3548233 | 174.1.1.43 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 | 0.51 | 36.0 | 3.76e-01 | 92.9% | 78.2% |
| 3762118 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.51 | 35.0 | 3.74e-01 | 92.9% | 77.6% |
| 3994022 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.51 | 32.0 | 3.58e-01 | 91.8% | 80.7% |
| 3899721 | 174.1.1.43 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 | 0.50 | 35.0 | 3.68e-01 | 92.4% | 78.2% |
| 3748303 | 174.1.1.52 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF27925 | 0.50 | 32.0 | 3.53e-01 | 92.4% | 78.0% |
D2
high
residues 57-141_176-213
Domain cluster:
rep: BML_coassembly_scaffold_234_prodigal-single.1__X__X__00197__D302-449
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 26.0 | 3.15e-01 | 86.2% | 75.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3801818 | 252.1.1.3 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › DUF7081 | 0.59 | 36.0 | 4.18e-01 | 90.2% | 84.4% |
| 3245665 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 27.0 | 3.44e-01 | 87.0% | 74.3% |
| 3599927 | 5076.1.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier | 0.57 | 41.0 | 3.25e-01 | 75.6% | 90.2% |
| 3183917 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.55 | 40.0 | 3.09e-01 | 75.6% | 89.2% |
| 3516948 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.55 | 40.0 | 3.10e-01 | 74.8% | 96.0% |
| 4197003 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.54 | 47.0 | 3.42e-01 | 100.0% | 32.6% |
| 3253799 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.51 | 39.0 | 3.09e-01 | 82.1% | 89.1% |