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gwa1_scaffold_1_prodigal-single.1__X__X__00336
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00336
Identity
- Kingdom:
- phage
Quality
89.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-55
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r7kA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.75 | 63.0 | 5.92e-01 | 100.0% | 77.0% |
| 4ggmX02 | 3.40.140.80 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain | 0.65 | 52.0 | 3.85e-01 | 100.0% | 32.0% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.61 | 43.0 | 4.68e-01 | 100.0% | 100.0% |
| 5tipA01 | 2.70.9.10 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 | 0.59 | 51.0 | 3.47e-01 | 100.0% | 44.7% |
| 3f59D00 | 2.60.220.30 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.55 | 43.0 | 3.14e-01 | 90.0% | 81.8% |
| 1x44A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 47.0 | 3.70e-01 | 100.0% | 46.6% |
| 2krxA01 | 3.90.940.40 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › Protein CHLORORESPIRATORY REDUCTION 7 | 0.54 | 45.0 | 4.12e-01 | 100.0% | 100.0% |
| 1vwxH02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.54 | 43.0 | 3.59e-01 | 98.0% | 97.1% |
| 1g1cA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.59e-01 | 100.0% | 48.0% |
| 2vtcA00 | 2.70.50.70 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › | 0.53 | 45.0 | 2.98e-01 | 100.0% | 35.5% |
| 2qyzA01 | 3.30.1490.160 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains | 0.52 | 35.0 | 3.48e-01 | 70.0% | 69.8% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.08e-01 | 98.0% | 52.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3738248 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.65 | 46.0 | 4.06e-01 | 98.0% | 50.7% |
| 1734768 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.62 | 41.0 | 4.00e-01 | 100.0% | 60.3% |
| 4927165 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.59 | 39.0 | 3.89e-01 | 100.0% | 63.6% |
| 3257381 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.59 | 51.0 | 3.62e-01 | 100.0% | 51.9% |
| 3555970 | 12.5.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 | 0.59 | 45.0 | 3.19e-01 | 88.0% | 73.5% |
| 3935475 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 48.0 | 3.04e-01 | 100.0% | 23.1% |
| 3217171 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.55 | 42.0 | 3.35e-01 | 100.0% | 41.0% |
| 4945437 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.54 | 46.0 | 3.26e-01 | 100.0% | 29.4% |
| 4940898 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.54 | 40.0 | 2.68e-01 | 80.0% | 71.2% |
| 3345127 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.54 | 40.0 | 3.83e-01 | 88.0% | 70.8% |
| 2106273 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.53 | 43.0 | 3.60e-01 | 100.0% | 94.1% |
| 3790689 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 40.0 | 3.57e-01 | 92.0% | 61.4% |