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gwa1_scaffold_1_prodigal-single.1__X__X__00417
Bact-Virgwa1_scaffold_1_prodigal-single.1__X__X__00417
Identity
- Kingdom:
- phage
Quality
57.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 188-315_482-497
Domain cluster:
rep: BML_coassembly_scaffold_13_prodigal-single.1__X__X__00245__D116-253
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4axzA00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.52 | 38.0 | 3.41e-01 | 78.5% | 75.2% |
D2
medium
residues 316-448
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.59 | 45.0 | 4.56e-01 | 78.9% | 81.2% |
| 8hk0B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.58 | 46.0 | 4.63e-01 | 85.7% | 86.2% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 42.0 | 4.66e-01 | 84.2% | 100.0% |
| 4o6mA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.56 | 41.0 | 3.59e-01 | 75.2% | 54.9% |
| 1r2jA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 45.0 | 4.39e-01 | 85.7% | 81.2% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 43.0 | 4.10e-01 | 92.5% | 71.4% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.55 | 42.0 | 4.50e-01 | 98.5% | 93.9% |
| 3lmfA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 40.0 | 4.39e-01 | 84.2% | 94.5% |
| 6ldkA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.53 | 37.0 | 3.46e-01 | 72.9% | 61.6% |
| 3vadA01 | 1.20.140.20 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain | 0.52 | 47.0 | 4.45e-01 | 98.5% | 84.6% |
| 2zxkA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.51 | 43.0 | 3.46e-01 | 91.0% | 86.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3937142 | 601.54.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 | 0.59 | 46.0 | 4.29e-01 | 82.7% | 83.5% |
| 4095048 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.58 | 41.0 | 4.27e-01 | 70.7% | 80.8% |
| 3553221 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.58 | 41.0 | 4.29e-01 | 71.4% | 80.8% |
| 3814234 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.56 | 45.0 | 4.55e-01 | 100.0% | 86.9% |
| 3723424 | 1174.1.1.2 ↗ | alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › LtrA | 0.55 | 48.0 | 4.15e-01 | 94.0% | 60.5% |
| 4361615 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.55 | 40.0 | 3.49e-01 | 77.4% | 87.9% |
| 3528431 | 633.21.1.24 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › PF25970 | 0.54 | 38.0 | 4.04e-01 | 91.7% | 83.5% |
| 3733826 | 5001.1.1.131 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › DUF7702 | 0.54 | 47.0 | 3.98e-01 | 100.0% | 74.6% |
| 4318414 | 4266.2.1.0 ↗ | alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like | 0.52 | 34.0 | 3.75e-01 | 72.9% | 80.0% |
| 3401408 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.52 | 41.0 | 3.99e-01 | 85.0% | 89.3% |
| 3511539 | 5001.1.1.31 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GPR180-TMEM145_TM | 0.51 | 41.0 | 3.36e-01 | 85.7% | 74.9% |
| 4983398 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.51 | 39.0 | 3.52e-01 | 80.5% | 80.0% |
| 3178547 | 5059.1.1.3 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT | 0.51 | 46.0 | 3.57e-01 | 100.0% | 83.5% |
| 3925011 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.51 | 44.0 | 3.50e-01 | 94.7% | 95.6% |
| 4216571 | 601.54.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 | 0.50 | 40.0 | 4.13e-01 | 87.2% | 91.2% |
D3
medium
residues 896-949
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01464.26 best | SLT | 23.2 | 6.10e-05 | 100.0% | 36.8% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.94 | 89.0 | 5.91e-01 | 100.0% | 33.5% |
| 6cfcA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.91 | 85.0 | 5.84e-01 | 100.0% | 34.2% |
| 1qsaA03 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.90 | 83.0 | 5.62e-01 | 100.0% | 31.8% |
| 4yibA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.86 | 79.0 | 5.53e-01 | 100.0% | 36.7% |
| 4c5fA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.84 | 76.0 | 5.26e-01 | 100.0% | 33.3% |
| 1xsfA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.79 | 65.0 | 5.15e-01 | 100.0% | 45.4% |
| 1am7A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.79 | 70.0 | 5.01e-01 | 100.0% | 52.6% |
| 3zvqA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.78 | 59.0 | 5.35e-01 | 94.4% | 61.4% |
| 7k5cB01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.69 | 61.0 | 4.35e-01 | 100.0% | 34.0% |
| 2ikbC00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.66 | 51.0 | 3.70e-01 | 100.0% | 28.6% |
| 1dvoA00 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.54 | 40.0 | 2.95e-01 | 79.6% | 74.3% |
| 4behA01 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 33.0 | 3.19e-01 | 92.6% | 53.1% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1175858 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.94 | 89.0 | 5.85e-01 | 100.0% | 32.3% |
| 3582448 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.94 | 74.0 | 5.38e-01 | 100.0% | 34.6% |
| 3839661 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.93 | 87.0 | 5.87e-01 | 100.0% | 31.8% |
| 4995668 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.91 | 84.0 | 6.23e-01 | 100.0% | 43.1% |
| 3941811 | 235.1.1.32 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 | 0.90 | 83.0 | 5.68e-01 | 100.0% | 32.4% |
| 4321901 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.90 | 73.0 | 4.82e-01 | 100.0% | 24.9% |
| 3978377 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.90 | 72.0 | 4.75e-01 | 100.0% | 23.6% |
| 4164050 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.90 | 72.0 | 4.69e-01 | 100.0% | 22.4% |
| 3970721 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.90 | 84.0 | 5.62e-01 | 100.0% | 36.6% |
| 3979308 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.89 | 80.0 | 5.42e-01 | 100.0% | 29.7% |
| 3254511 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.87 | 76.0 | 5.98e-01 | 100.0% | 48.6% |
| 3965879 | 235.1.1.32 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 | 0.87 | 80.0 | 5.50e-01 | 100.0% | 34.5% |
| 3260862 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.86 | 74.0 | 5.73e-01 | 100.0% | 45.5% |
| 4031083 | 235.1.1.14 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas | 0.86 | 76.0 | 6.52e-01 | 100.0% | 63.7% |
| 4258903 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.84 | 77.0 | 5.34e-01 | 100.0% | 33.9% |
| 4530587 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.84 | 76.0 | 5.12e-01 | 100.0% | 30.3% |
| 3945171 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.84 | 77.0 | 5.44e-01 | 100.0% | 36.6% |
| 3385979 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.83 | 73.0 | 4.85e-01 | 100.0% | 26.8% |
| 3964630 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.81 | 67.0 | 4.65e-01 | 100.0% | 29.3% |
| 185214 | 235.1.1.14 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas | 0.81 | 66.0 | 5.56e-01 | 100.0% | 54.5% |
| 3657952 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.81 | 73.0 | 4.84e-01 | 100.0% | 28.5% |
| 3947950 | 235.1.1.33 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PF31186 | 0.78 | 69.0 | 4.91e-01 | 100.0% | 56.2% |
| 3279121 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.77 | 61.0 | 5.08e-01 | 100.0% | 50.0% |
| 3587369 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.77 | 58.0 | 5.48e-01 | 98.1% | 67.7% |
| 3839391 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.74 | 67.0 | 4.75e-01 | 100.0% | 37.4% |
| 4135695 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.69 | 53.0 | 4.59e-01 | 98.1% | 54.3% |
| 4127805 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.53 | 37.0 | 2.73e-01 | 74.1% | 38.0% |
| 3968625 | 109.51.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › TssA helical domains › TssA helical domains › ImpA_N | 0.52 | 41.0 | 2.85e-01 | 100.0% | 88.2% |
| 3513182 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 40.0 | 3.17e-01 | 87.0% | 40.0% |
D4
medium
residues 950-1078
Domain cluster:
rep: MW460245.1__QRE00342.1__X__00299__D387-481
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.94 | 69.0 | 6.01e-01 | 83.7% | 53.3% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 29.0 | 3.30e-01 | 96.1% | 68.4% |
| 6q9jB02 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.53 | 24.0 | 2.79e-01 | 96.9% | 56.8% |
| 1yt3A02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.52 | 36.0 | 4.03e-01 | 74.4% | 92.9% |
| 7uzqK01 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.51 | 37.0 | 2.69e-01 | 72.9% | 88.1% |
| 2ayaA00 | 3.30.300.150 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DNA polymerase III, tau subunit, domain V | 0.50 | 36.0 | 3.63e-01 | 72.1% | 90.6% |
| 7z7vF03 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.50 | 25.0 | 2.99e-01 | 78.3% | 68.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3575989 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.62 | 45.0 | 3.83e-01 | 75.2% | 73.1% |
| 4280209 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.60 | 44.0 | 3.69e-01 | 75.2% | 70.7% |
| 3409410 | 5067.1.1.5 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing | 0.55 | 44.0 | 2.65e-01 | 86.8% | 64.4% |
| 4938229 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.55 | 40.0 | 2.92e-01 | 76.0% | 42.3% |
| 3298285 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 30.0 | 3.71e-01 | 71.3% | 90.7% |