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gwa1_scaffold_31_prodigal-single.1__X__X__00021
Bact-Virgwa1_scaffold_31_prodigal-single.1__X__X__00021
Identity
- Kingdom:
- phage
Quality
72.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-74
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7e5wA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.78 | 71.0 | 5.04e-01 | 100.0% | 36.7% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.74 | 63.0 | 3.92e-01 | 100.0% | 19.1% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.74 | 61.0 | 4.65e-01 | 97.9% | 38.8% |
| 3s0aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.71 | 48.0 | 3.66e-01 | 72.3% | 95.0% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.69 | 64.0 | 5.57e-01 | 100.0% | 74.6% |
| 2dbdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.69 | 51.0 | 3.84e-01 | 78.7% | 38.3% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.68 | 55.0 | 4.18e-01 | 95.7% | 37.4% |
| 3on2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 57.0 | 3.87e-01 | 100.0% | 38.4% |
| 4gytA00 | 1.20.120.740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 | 0.64 | 55.0 | 3.76e-01 | 100.0% | 29.9% |
| 1zvwA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.64 | 55.0 | 4.99e-01 | 100.0% | 75.8% |
| 2fq3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 4.43e-01 | 100.0% | 61.2% |
| 2dbhA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.63 | 42.0 | 3.62e-01 | 70.2% | 43.0% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 49.0 | 3.87e-01 | 93.6% | 54.4% |
| 8d8lN01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 43.0 | 3.59e-01 | 72.3% | 39.5% |
| 4ga0A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 45.0 | 3.32e-01 | 85.1% | 31.5% |
| 2qwtA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 51.0 | 3.57e-01 | 100.0% | 59.3% |
| 4r42A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 50.0 | 3.41e-01 | 97.9% | 82.4% |
| 4o92A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 47.0 | 3.87e-01 | 97.9% | 75.2% |
| 2hxiB02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 49.0 | 3.68e-01 | 100.0% | 52.2% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 40.0 | 3.70e-01 | 72.3% | 52.3% |
| 1cy5A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.59 | 46.0 | 3.79e-01 | 89.4% | 88.0% |
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.58 | 41.0 | 2.64e-01 | 74.5% | 18.7% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.57 | 47.0 | 3.48e-01 | 100.0% | 100.0% |
| 3ungC04 | 1.20.120.1260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-Cas system, Cmr2 subunit, D4 domain, six-helix bundle | 0.56 | 47.0 | 3.85e-01 | 100.0% | 66.0% |
| 4ikmA02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 46.0 | 3.81e-01 | 97.9% | 58.1% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.56 | 48.0 | 3.25e-01 | 100.0% | 72.3% |
| 3bg2A02 | 1.10.3550.10 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like | 0.55 | 47.0 | 3.59e-01 | 100.0% | 50.9% |
| 2p67A01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 42.0 | 4.21e-01 | 100.0% | 92.3% |
| 4ci1B03 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 47.0 | 4.09e-01 | 95.7% | 98.6% |
| 4irlB02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 44.0 | 3.59e-01 | 97.9% | 84.9% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 42.0 | 3.60e-01 | 87.2% | 58.9% |
| 3ooqA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.52 | 41.0 | 2.64e-01 | 100.0% | 17.2% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.51 | 43.0 | 2.91e-01 | 100.0% | 65.2% |
| 2n7zA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.50 | 43.0 | 3.34e-01 | 97.9% | 50.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001590 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.73 | 60.0 | 5.81e-01 | 100.0% | 89.1% |
| 3437143 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.73 | 49.0 | 5.01e-01 | 74.5% | 73.3% |
| 3816200 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 57.0 | 4.54e-01 | 97.9% | 43.8% |
| 3474812 | 529.1.1.2 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP | 0.69 | 56.0 | 5.22e-01 | 100.0% | 76.9% |
| 3897972 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 57.0 | 4.94e-01 | 97.9% | 60.0% |
| 3998938 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.67 | 47.0 | 2.66e-01 | 100.0% | 6.9% |
| 3267504 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.66 | 55.0 | 3.14e-01 | 100.0% | 8.8% |
| 3868088 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.66 | 47.0 | 3.86e-01 | 78.7% | 44.4% |
| 1758403 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.64 | 46.0 | 3.81e-01 | 78.7% | 43.7% |
| 5036863 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.63 | 44.0 | 2.93e-01 | 93.6% | 16.9% |
| 3908029 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.62 | 45.0 | 3.65e-01 | 78.7% | 40.9% |
| 3355429 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.62 | 41.0 | 3.77e-01 | 74.5% | 50.8% |
| 3520875 | 189.1.1.0 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP | 0.61 | 49.0 | 3.46e-01 | 100.0% | 51.9% |
| 3731622 | 109.1.1.26 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N_3 | 0.60 | 48.0 | 3.15e-01 | 100.0% | 50.0% |
| 2723813 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.60 | 49.0 | 3.25e-01 | 100.0% | 32.5% |
| 3549109 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.59 | 42.0 | 3.46e-01 | 78.7% | 41.1% |
| 3286776 | 3716.1.1.0 ↗ | alpha arrays › DUF3349 › DUF3349 › DUF3349 | 0.59 | 45.0 | 3.63e-01 | 85.1% | 49.5% |
| 3695992 | 109.4.1.414 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N | 0.59 | 47.0 | 3.79e-01 | 100.0% | 51.8% |
| 3513576 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.59 | 45.0 | 4.41e-01 | 95.7% | 90.9% |
| 3903413 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.59 | 52.0 | 4.01e-01 | 97.9% | 49.0% |
| 3688545 | 109.1.1.36 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N | 0.58 | 49.0 | 3.15e-01 | 100.0% | 42.4% |
| 3965569 | 150.1.1.183 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Transposase_20 | 0.58 | 47.0 | 3.31e-01 | 97.9% | 48.3% |
| 3734511 | 109.4.1.414 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N | 0.57 | 45.0 | 3.04e-01 | 100.0% | 21.3% |
| 4393704 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 42.0 | 2.46e-01 | 85.1% | 15.5% |
| 5056942 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.56 | 48.0 | 3.19e-01 | 100.0% | 78.5% |
| 3288075 | 2004.1.1.600 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn, AAA_21 | 0.55 | 39.0 | 2.29e-01 | 83.0% | 7.0% |
| 3478399 | 604.8.1.0 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo | 0.54 | 44.0 | 2.94e-01 | 100.0% | 48.7% |
| 3961229 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 39.0 | 2.69e-01 | 83.0% | 42.1% |
| 3689887 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 35.0 | 3.38e-01 | 70.2% | 98.3% |
| 3521686 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.53 | 47.0 | 3.74e-01 | 97.9% | 53.3% |
| 2410369 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.53 | 46.0 | 3.74e-01 | 97.9% | 57.5% |
| 3881573 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.52 | 44.0 | 3.49e-01 | 97.9% | 48.0% |
| 3594016 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 43.0 | 3.89e-01 | 100.0% | 70.0% |
| 3262798 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.52 | 37.0 | 3.17e-01 | 83.0% | 43.3% |
| 3912664 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.51 | 45.0 | 3.67e-01 | 97.9% | 56.5% |
| 3907058 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.51 | 44.0 | 3.48e-01 | 97.9% | 53.0% |