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gwa1_scaffold_31_prodigal-single.1__X__X__00046
Bact-Virgwa1_scaffold_31_prodigal-single.1__X__X__00046
Identity
- Kingdom:
- phage
Quality
77.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-94
Domain cluster:
representative
D2
medium
residues 109-192
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2azeB00 | 6.10.250.540 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 34.0 | 3.21e-01 | 94.0% | 45.5% |
| 2q2eB05 | 2.60.40.2960 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 30.0 | 2.98e-01 | 70.2% | 44.0% |
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.54 | 46.0 | 2.97e-01 | 100.0% | 92.7% |
| 4m00A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 32.0 | 3.20e-01 | 96.4% | 55.8% |
| 6iaaA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 32.0 | 3.32e-01 | 100.0% | 64.2% |
| 5ikuA01 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 32.0 | 3.08e-01 | 98.8% | 51.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955693 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 36.0 | 3.59e-01 | 97.6% | 56.5% |
| 3353072 | 4154.1.1.1 ↗ | beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP | 0.59 | 33.0 | 2.97e-01 | 95.2% | 38.3% |
| 3628540 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 42.0 | 4.29e-01 | 98.8% | 78.8% |
| 4960108 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 32.0 | 3.34e-01 | 85.7% | 58.7% |
| 3395999 | 382.1.1.6 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR | 0.53 | 35.0 | 3.31e-01 | 78.6% | 54.3% |
D3
medium
residues 193-258
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.56 | 39.0 | 3.17e-01 | 80.3% | 36.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5058661 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.64 | 35.0 | 2.79e-01 | 75.8% | 26.9% |
| 3624550 | 6043.1.1.4 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 | 0.57 | 39.0 | 3.07e-01 | 72.7% | 86.0% |
| 3189705 | 2003.1.2.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI | 0.56 | 45.0 | 2.81e-01 | 90.9% | 67.1% |
| 3214822 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.56 | 33.0 | 2.15e-01 | 80.3% | 12.5% |
| 4952838 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.54 | 34.0 | 2.26e-01 | 80.3% | 14.7% |
| 3169722 | 109.4.1.298 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS15-like_hel | 0.53 | 41.0 | 2.82e-01 | 90.9% | 72.1% |