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gwa1_scaffold_31_prodigal-single.1__X__X__00126
Bact-Virgwa1_scaffold_31_prodigal-single.1__X__X__00126
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 48-73_116-213
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bgvD00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.79 | 72.0 | 5.48e-01 | 96.8% | 88.8% |
| 1ve3A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.76 | 66.0 | 5.45e-01 | 92.7% | 80.2% |
| 5fcdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.70 | 64.0 | 5.22e-01 | 100.0% | 89.5% |
| 4mtlA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 57.0 | 4.71e-01 | 95.2% | 70.7% |
| 2o3aA00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.61 | 32.0 | 3.00e-01 | 85.5% | 38.5% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 54.0 | 4.85e-01 | 96.0% | 83.6% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 25.0 | 3.14e-01 | 96.0% | 60.8% |
| 3fzgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 51.0 | 4.37e-01 | 92.7% | 73.5% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 27.0 | 3.18e-01 | 84.7% | 61.2% |
| 1vjrA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.58 | 44.0 | 4.69e-01 | 88.7% | 92.6% |
| 3qvoA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 49.0 | 4.19e-01 | 93.5% | 100.0% |
| 3gc6A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 43.0 | 4.48e-01 | 88.7% | 92.9% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 46.0 | 3.58e-01 | 93.5% | 51.6% |
| 1x31C02 | 3.30.70.1520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase | 0.54 | 25.0 | 3.02e-01 | 83.9% | 63.7% |
| 1ez4B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 44.0 | 4.17e-01 | 87.9% | 98.6% |
| 3uk7A01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.54 | 44.0 | 3.80e-01 | 87.1% | 90.5% |
| 2qgqA01 | 3.80.30.20 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › tm_1862 like domain | 0.54 | 47.0 | 4.00e-01 | 98.4% | 76.9% |
| 5ksoA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 43.0 | 3.95e-01 | 88.7% | 86.1% |
| 3t1iD01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.53 | 45.0 | 3.51e-01 | 96.0% | 87.3% |
| 1yt8A04 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.53 | 33.0 | 3.52e-01 | 91.1% | 72.0% |
| 2pcrA02 | 3.40.190.80 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.52 | 37.0 | 3.85e-01 | 89.5% | 79.1% |
| 6u9hF02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.51 | 27.0 | 3.32e-01 | 75.0% | 80.5% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.51 | 27.0 | 3.30e-01 | 76.6% | 79.5% |
| 1mhyD00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.51 | 44.0 | 2.97e-01 | 96.8% | 65.1% |
| 3vkwA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 42.0 | 4.06e-01 | 90.3% | 83.8% |
| 4k28A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 41.0 | 3.96e-01 | 91.1% | 89.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164399 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.80 | 72.0 | 5.63e-01 | 96.0% | 82.4% |
| 3589860 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.79 | 72.0 | 5.67e-01 | 96.8% | 79.9% |
| 5048411 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.79 | 71.0 | 5.86e-01 | 95.2% | 75.2% |
| 3248701 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.79 | 70.0 | 5.57e-01 | 96.0% | 88.5% |
| 170260 | 2003.1.5.151 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 | 0.78 | 70.0 | 5.70e-01 | 96.0% | 88.2% |
| 5072976 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.78 | 70.0 | 5.90e-01 | 95.2% | 81.0% |
| 5032889 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.64 | 53.0 | 4.02e-01 | 90.3% | 80.0% |
| 4022962 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 56.0 | 3.57e-01 | 100.0% | 75.0% |
| 5078966 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.53 | 44.0 | 3.59e-01 | 93.5% | 88.8% |
| 4095798 | 7587.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P | 0.51 | 36.0 | 3.62e-01 | 89.5% | 72.6% |
| 4954089 | 2003.1.1.71 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CoA_binding_3 | 0.51 | 40.0 | 3.99e-01 | 89.5% | 83.2% |
| 3458783 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 40.0 | 2.97e-01 | 84.7% | 39.4% |
D2
medium
residues 74-115
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wpqA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 51.0 | 3.46e-01 | 100.0% | 33.5% |
| 1zkdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 50.0 | 3.45e-01 | 100.0% | 47.1% |
| 3bkwB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 51.0 | 3.33e-01 | 100.0% | 30.1% |
| 3l8dA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 48.0 | 3.25e-01 | 100.0% | 32.2% |
| 3ftdA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 50.0 | 3.39e-01 | 100.0% | 40.7% |
| 2e3tB03 | 3.30.43.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | 0.58 | 44.0 | 3.99e-01 | 85.7% | 88.5% |
| 1zkpC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 46.0 | 2.93e-01 | 92.9% | 31.8% |
| 3luyA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 40.0 | 3.49e-01 | 88.1% | 44.6% |
| 3mkcA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.56 | 43.0 | 2.84e-01 | 100.0% | 51.3% |
| 2pbzA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 44.0 | 3.64e-01 | 90.5% | 51.2% |
| 3bl4A02 | 3.40.970.30 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › yp_829618.1 like domains | 0.55 | 41.0 | 4.08e-01 | 90.5% | 89.6% |
| 6jimB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 3.14e-01 | 100.0% | 30.1% |
| 1euhA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 43.0 | 2.71e-01 | 100.0% | 36.1% |
| 6yj5q01 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.52 | 40.0 | 3.05e-01 | 95.2% | 37.4% |
| 2lciA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 40.0 | 3.00e-01 | 97.6% | 45.5% |
| 2pvuA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 40.0 | 3.11e-01 | 85.7% | 35.7% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.51 | 39.0 | 2.69e-01 | 100.0% | 68.4% |
| 1vp2A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.51 | 36.0 | 2.48e-01 | 81.0% | 17.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4148640 | 2003.1.1.43 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_3 | 0.66 | 52.0 | 3.69e-01 | 100.0% | 26.4% |
| 3658049 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.66 | 53.0 | 3.35e-01 | 100.0% | 27.5% |
| 4530066 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.66 | 51.0 | 3.22e-01 | 100.0% | 15.1% |
| 4057312 | 7516.1.1.24 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 | 0.63 | 51.0 | 3.40e-01 | 97.6% | 26.7% |
| 4501100 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.62 | 42.0 | 2.70e-01 | 71.4% | 45.3% |
| 4490078 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.62 | 44.0 | 3.68e-01 | 90.5% | 38.9% |
| 3590239 | 2484.1.1.141 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › baeRF_family6 | 0.62 | 49.0 | 3.53e-01 | 100.0% | 37.4% |
| 4994227 | 7516.1.1.24 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 | 0.56 | 45.0 | 2.98e-01 | 100.0% | 25.0% |
| 3517263 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.55 | 44.0 | 2.63e-01 | 100.0% | 12.8% |
| 4400016 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 41.0 | 3.57e-01 | 90.5% | 50.7% |
| 3302679 | 101.1.17.1 ↗ | alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e | 0.54 | 39.0 | 3.40e-01 | 90.5% | 46.7% |
| 4168864 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.53 | 39.0 | 2.65e-01 | 85.7% | 99.0% |
| 3887798 | 101.1.17.1 ↗ | alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e | 0.52 | 39.0 | 2.83e-01 | 88.1% | 26.1% |
| 3970971 | 217.1.1.1 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 | 0.51 | 38.0 | 2.65e-01 | 92.9% | 58.3% |